SMTL ID : 8k8s.1

F8-A22-E4 complex of MPXV in complex with DNA and Ara-CTP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.549, Y.550, N.551, D.753 Ligands: HF4.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.549, A:Y.550, A:D.753

1 x HF4: 4-amino-1-{5-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}pyrimidin-2(1H)-one(Non-covalent)

HF4.2: 16 residues within 4Å: Chain A: D.549, Y.550, N.551, S.552, L.553, Y.554, R.634, K.661, I.662, N.665, T.752, D.753 Chain D: C.12 Chain E: G.4, G.5 Ligands: MG.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.549, A:L.553, A:Y.554, A:N.665, A:N.665 Water bridges: A:S.552 Salt bridges: A:R.634, A:K.661, A:K.661

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, Y. et al., Structural basis for the inhibition mechanism of the DNA polymerase holoenzyme from mpox virus. Structure (2024)

Release Date

2024-06-05

Peptides

DNA polymerase F8: A
Uracil-DNA glycosylase E4: B
DNA polymerase processivity factor component A20: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA polymerase F8

Uracil-DNA glycosylase E4

DNA polymerase processivity factor component A20

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