SMTL ID : 8k91.1

CryoEM structure of LonC S582A hepatmer with Lysozyme

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-heptamer

Ligands

7 x TS6: Monothiophosphate(Non-covalent)

TS6.1: 7 residues within 4Å: Chain A: S.56, L.57, G.58, K.59, H.60, V.438 Chain B: E.378 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.56, A:L.57, A:G.58, A:K.59, A:K.59, A:K.59, A:H.60, A:H.60 TS6.2: 8 residues within 4Å: Chain B: P.55, S.56, L.57, G.58, K.59, H.60 Chain C: R.331, E.378 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.56, B:L.57, B:G.58, B:K.59, B:K.59, B:K.59, B:H.60, B:H.60 TS6.3: 5 residues within 4Å: Chain C: S.56, L.57, G.58, K.59, H.60 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:S.56, C:L.57, C:G.58, C:K.59, C:K.59, C:K.59, C:H.60, C:H.60 TS6.4: 5 residues within 4Å: Chain D: S.56, L.57, G.58, K.59, H.60 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:S.56, D:L.57, D:G.58, D:K.59, D:K.59, D:K.59, D:H.60 TS6.5: 5 residues within 4Å: Chain E: S.56, L.57, G.58, K.59, H.60 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:S.56, E:L.57, E:G.58, E:K.59, E:K.59, E:K.59, E:H.60, E:H.60 TS6.6: 9 residues within 4Å: Chain F: P.55, S.56, L.57, G.58, K.59, H.60, V.438 Chain G: R.331, E.378 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:S.56, F:L.57, F:G.58, F:K.59, F:K.59, F:K.59, F:H.60, F:H.60 TS6.7: 8 residues within 4Å: Chain A: R.331, E.378 Chain G: S.56, L.57, G.58, K.59, H.60, V.438 8 PLIP interactions: 8 interactions with chain G Hydrogen bonds: G:S.56, G:L.57, G:G.58, G:K.59, G:K.59, G:K.59, G:H.60, G:H.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Bifurcated assembly pathway and dual function of a Lon-like protease revealed by cryo-EM Analysis. Fundam Res (2024)

Release Date

2024-08-07

Peptides

Endopeptidase La: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Endopeptidase La

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