SMTL ID : 8k9z.2 (1 other biounit)

Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-bound calmodulin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain B: D.23, D.25, D.27, T.29 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.23, B:D.25, B:D.27, B:T.29 CA.2: 5 residues within 4Å: Chain B: D.96, D.98, N.100, Y.102, I.103 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.96, B:D.96, B:Y.102 CA.3: 4 residues within 4Å: Chain B: V.58, D.61, T.65, E.70 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:T.65, B:T.65, B:E.70 CA.4: 7 residues within 4Å: Chain B: D.132, I.133, D.134, G.135, D.136, G.137, Q.138 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.132, B:D.134, B:D.134, B:D.136, B:Q.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, S. et al., Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet. Nat Commun (2024)

Release Date

2024-07-10

Peptides

RDTND-RID CBD: A
Calmodulin-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

RDTND-RID CBD

Calmodulin-2

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