SMTL ID : 8ka1.3 (3 other biounits)

Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-free calmodulin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

hetero-1-1-mer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain B: D.96, D.98, N.100, Y.102 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.96, B:D.98, B:Y.102 MG.2: 4 residues within 4Å: Chain B: D.23, D.25, D.27, T.29 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.23, B:D.27, B:T.29, B:T.29 MG.3: 4 residues within 4Å: Chain B: D.132, D.134, D.136, Q.138 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.132, B:D.134, B:D.134, B:D.136, B:Q.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, S. et al., Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet. Nat Commun (2024)

Release Date

2024-07-10

Peptides

RDTND-RID CBD: A
Calmodulin-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

RDTND-RID CBD

Calmodulin-2

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