SMTL ID : 8kbh.1 (1 other biounit)

Structure of CbTad1 complexed with 2',3'-cGAMP and cA3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-5-1-mer

Ligands

2 x A- A- A: (2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDE(Non-covalent)

A-A-A.1: 18 residues within 4Å: Chain A: Q.84, S.90, R.91, A.94, C.95, T.98 Chain C: Q.84, S.90, R.91, A.94, C.95, T.98 Chain E: Q.84, S.90, R.91, A.94, C.95, T.98 Protein-ligand interaction information (PLIP) not available A-A-A.2: 17 residues within 4Å: Chain B: S.90, R.91, A.94, C.95, T.98 Chain D: Q.84, S.90, R.91, A.94, C.95, T.98 Chain F: Q.82, S.88, R.89, A.92, C.93, T.96 Protein-ligand interaction information (PLIP) not available

6 x 1SY: cGAMP(Non-covalent)

1SY.3: 23 residues within 4Å: Chain A: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122, N.123 Chain B: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 21 PLIP interactions: 14 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:P.25, A:G.56, A:K.59, A:R.110, A:G.121, A:G.121, A:T.122, B:Q.9, B:N.93, B:N.93 Water bridges: A:K.59, A:K.59, B:L.14, B:R.79 Salt bridges: A:H.30, A:R.110, A:R.114 pi-Cation interactions: A:R.110, A:R.110 pi-Stacking: B:F.83, B:F.83 1SY.4: 23 residues within 4Å: Chain A: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 Chain B: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122, N.123 22 PLIP interactions: 13 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:P.25, B:G.56, B:R.110, B:G.121, B:G.121, B:T.122, A:Q.9, A:E.12, A:N.93, A:N.93 Water bridges: B:R.58, B:R.58, A:L.14, A:L.14, A:R.79 Salt bridges: B:H.30, B:R.110, B:R.114 pi-Cation interactions: B:R.110, B:R.110 pi-Stacking: A:F.83, A:F.83 1SY.5: 22 residues within 4Å: Chain C: P.25, G.26, H.30, Q.54, K.55, G.56, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122, N.123 Chain D: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 20 PLIP interactions: 8 interactions with chain D, 12 interactions with chain C Hydrogen bonds: D:Q.9, D:E.12, D:N.93, D:N.93, C:P.25, C:G.56, C:R.110, C:G.121, C:T.122 Water bridges: D:L.14, D:R.79, C:R.58, C:G.121 pi-Stacking: D:F.83, D:F.83 Salt bridges: C:H.30, C:R.110, C:R.114 pi-Cation interactions: C:R.110, C:R.110 1SY.6: 22 residues within 4Å: Chain C: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 Chain D: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122 21 PLIP interactions: 13 interactions with chain D, 8 interactions with chain C Hydrogen bonds: D:P.25, D:G.56, D:R.110, D:G.121, D:G.121, D:T.122, C:Q.9, C:E.12, C:N.93, C:N.93 Water bridges: D:R.58, D:R.58, C:L.14, C:R.79 Salt bridges: D:H.30, D:R.110, D:R.114 pi-Cation interactions: D:R.110, D:R.110 pi-Stacking: C:F.83, C:F.83 1SY.7: 23 residues within 4Å: Chain E: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122, N.123 Chain F: Q.7, E.10, L.12, L.78, F.81, F.86, N.91 23 PLIP interactions: 9 interactions with chain F, 14 interactions with chain E Hydrogen bonds: F:Q.7, F:E.10, F:E.10, F:N.91, F:N.91, E:P.25, E:G.56, E:R.110, E:G.121, E:G.121, E:T.122 Water bridges: F:L.12, F:R.77, E:R.58, E:R.58, E:D.69 pi-Stacking: F:F.81, F:F.81 Salt bridges: E:H.30, E:R.110, E:R.114 pi-Cation interactions: E:R.110, E:R.110 1SY.8: 22 residues within 4Å: Chain E: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 Chain F: P.23, G.24, H.28, Q.52, K.53, G.54, A.55, I.66, R.108, V.109, R.112, V.117, L.118, G.119, T.120 22 PLIP interactions: 13 interactions with chain F, 9 interactions with chain E Hydrogen bonds: F:P.23, F:G.54, F:R.108, F:G.119, F:G.119, F:T.120, E:Q.9, E:E.12, E:N.93, E:N.93 Water bridges: F:R.56, F:R.56, E:L.14, E:R.79, E:R.79 Salt bridges: F:H.28, F:R.108, F:R.112 pi-Cation interactions: F:R.108, F:R.108 pi-Stacking: E:F.83, E:F.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, D. et al., Single phage proteins sequester signals from TIR and cGAS-like enzymes. Nature (2024)

Release Date

2024-08-21

Peptides

Thoeris anti-defense 1: ABCDE
Thoeris anti-defense 1: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

D
G

E
H

F
I

Thoeris anti-defense 1

Thoeris anti-defense 1

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