SMTL ID : 8kbh.2 (1 other biounit)

Structure of CbTad1 complexed with 2',3'-cGAMP and cA3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-hexamer

Ligands

2 x A- A- A: (2-ACETYL-5-METHYLANILINO)(2,6-DIBROMOPHENYL)ACETAMIDE(Non-covalent)

A-A-A.1: 18 residues within 4Å: Chain A: Q.84, S.90, R.91, A.94, C.95, T.98 Chain E: Q.84, S.90, R.91, A.94, C.95, T.98 Chain F: Q.84, S.90, R.91, A.94, C.95, T.98 Protein-ligand interaction information (PLIP) not available A-A-A.5: 18 residues within 4Å: Chain B: Q.84, S.90, R.91, A.94, C.95, T.98 Chain C: Q.84, S.90, R.91, A.94, C.95, T.98 Chain D: Q.84, S.90, R.91, A.94, C.95, T.98 Protein-ligand interaction information (PLIP) not available

6 x 1SY: cGAMP(Non-covalent)

1SY.2: 23 residues within 4Å: Chain A: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122, N.123 Chain B: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 22 PLIP interactions: 8 interactions with chain B, 14 interactions with chain A Hydrogen bonds: B:Q.9, B:E.12, B:N.93, B:N.93, A:P.25, A:G.56, A:R.110, A:G.121, A:G.121, A:T.122 Water bridges: B:L.14, B:R.79, A:R.58, A:R.58, A:N.123 pi-Stacking: B:F.83, B:F.83 Salt bridges: A:H.30, A:R.110, A:R.114 pi-Cation interactions: A:R.110, A:R.110 1SY.3: 23 residues within 4Å: Chain A: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 Chain B: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122, N.123 22 PLIP interactions: 13 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:P.25, B:G.56, B:R.110, B:G.121, B:G.121, B:T.122, A:Q.9, A:E.12, A:E.12, A:N.93, A:N.93 Water bridges: B:R.58, B:R.58, A:L.14, A:R.79 Salt bridges: B:H.30, B:R.110, B:R.114 pi-Cation interactions: B:R.110, B:R.110 pi-Stacking: A:F.83, A:F.83 1SY.4: 23 residues within 4Å: Chain C: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122, N.123 Chain F: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 25 PLIP interactions: 14 interactions with chain C, 11 interactions with chain F Hydrogen bonds: C:P.25, C:G.56, C:R.110, C:G.121, C:G.121, C:T.122, F:Q.9, F:E.12, F:N.93, F:N.93 Water bridges: C:R.58, C:R.58, C:N.123, F:E.12, F:E.12, F:L.14, F:L.14, F:R.79 Salt bridges: C:H.30, C:R.110, C:R.114 pi-Cation interactions: C:R.110, C:R.110 pi-Stacking: F:F.83, F:F.83 1SY.6: 23 residues within 4Å: Chain D: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122, N.123 Chain E: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 25 PLIP interactions: 14 interactions with chain D, 11 interactions with chain E Hydrogen bonds: D:P.25, D:G.56, D:R.110, D:G.121, D:G.121, D:T.122, E:Q.9, E:E.12, E:N.93, E:N.93 Water bridges: D:R.58, D:R.58, D:N.123, E:E.12, E:E.12, E:E.12, E:L.14, E:R.79 Salt bridges: D:H.30, D:R.110, D:R.114 pi-Cation interactions: D:R.110, D:R.110 pi-Stacking: E:F.83, E:F.83 1SY.7: 23 residues within 4Å: Chain D: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 Chain E: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122, N.123 21 PLIP interactions: 13 interactions with chain E, 8 interactions with chain D Hydrogen bonds: E:P.25, E:G.56, E:R.110, E:G.121, E:G.121, E:T.122, D:Q.9, D:E.12, D:N.93, D:N.93 Water bridges: E:R.58, E:R.58, D:L.14, D:R.79 Salt bridges: E:H.30, E:R.110, E:R.114 pi-Cation interactions: E:R.110, E:R.110 pi-Stacking: D:F.83, D:F.83 1SY.8: 23 residues within 4Å: Chain C: Q.9, E.12, L.14, L.80, F.83, F.88, N.93 Chain F: P.25, G.26, H.30, Q.54, K.55, G.56, A.57, I.68, R.110, V.111, R.114, V.119, L.120, G.121, T.122, N.123 23 PLIP interactions: 14 interactions with chain F, 9 interactions with chain C Hydrogen bonds: F:P.25, F:G.56, F:R.110, F:G.121, F:G.121, F:T.122, C:Q.9, C:E.12, C:N.93, C:N.93 Water bridges: F:R.58, F:R.58, F:N.123, C:L.14, C:L.14, C:R.79 Salt bridges: F:H.30, F:R.110, F:R.114 pi-Cation interactions: F:R.110, F:R.110 pi-Stacking: C:F.83, C:F.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, D. et al., Single phage proteins sequester signals from TIR and cGAS-like enzymes. Nature (2024)

Release Date

2024-08-21

Peptides

Thoeris anti-defense 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Thoeris anti-defense 1

Related Entries With Identical Sequence