SMTL ID : 8kcb.1

Complex of DDM1-nucleosome(H2A) complex with DDM1 bound to SHL2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.1: 6 residues within 4Å: Chain K: D.333, E.334, G.606, R.633, R.636 Ligands: ADP.2 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain K: L.202, Q.206, M.229, L.231, G.232, K.233, T.234, I.235, N.608, R.636, I.637 Ligands: BEF.1 7 PLIP interactions: 7 interactions with chain K Hydrogen bonds: K:Q.206, K:G.232, K:K.233, K:T.234, K:N.608 Salt bridges: K:R.636, K:R.636

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Mechanism of heterochromatin remodeling revealed by the DDM1 bound nucleosome structures. Structure (2024)

Release Date

2024-06-26

Peptides

Histone H2B.10: AB
Histone H3.1: CD
Histone H4: EF
Histone H2A.6: GH
ATP-dependent DNA helicase DDM1: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

C
F

D
E

E
H

F
G

G
A

H
B

K
K

Histone H2B.10

Histone H3.1

Histone H4

Histone H2A.6

ATP-dependent DNA helicase DDM1

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