SMTL ID : 8wh8.1

Structure of DDM1-nucleosome complex in ADP state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 8 residues within 4Å: Chain K: K.204, Y.206, L.232, G.233, T.235, I.236, F.273, V.437 4 PLIP interactions: 4 interactions with chain K Hydrogen bonds: K:K.204, K:K.204, K:G.233, K:T.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation. Nat.Plants (2024)

Release Date

2024-04-17

Peptides

Histone H3.1: AE
Histone H4: BF
Histone H2A.6: CG
Histone H2B.6: DH
ATP-dependent DNA helicase DDM1: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
K

Histone H3.1

Histone H4

Histone H2A.6

Histone H2B.6

ATP-dependent DNA helicase DDM1

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