SMTL ID : 8kg5.1

Prefusion RSV F Bound to Lonafarnib and D25 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-1-1-mer

Ligands

3 x 336: 4-{2-[4-(3,10-DIBROMO-8-CHLORO-6,11-DIHYDRO-5H-BENZO[5,6]CYCLOHEPTA[1,2-B]PYRIDIN-11-YL)PIPERIDIN-1-YL]-2-OXOETHYL}PIPERIDINE-1-CARBOXAMIDE(Non-covalent)

336.1: 17 residues within 4Å: Chain A: F.137, L.138, G.139, F.140, Q.354, E.356, M.396, T.397, S.398, D.486, E.487, F.488 Chain C: F.140, F.488, D.489 Ligands: 336.2, 336.3 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:F.488, A:F.488, A:F.488, C:F.140 Hydrogen bonds: A:Q.354, A:T.397, A:D.486, A:F.488 336.2: 17 residues within 4Å: Chain A: F.140, F.488, D.489 Chain B: F.137, L.138, G.139, F.140, Q.354, E.356, M.396, T.397, S.398, D.486, E.487, F.488 Ligands: 336.1, 336.3 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.488, B:F.488, B:F.488, A:F.140, A:F.488 Hydrogen bonds: B:Q.354, B:T.397, B:D.486, B:F.488 336.3: 17 residues within 4Å: Chain B: F.140, F.488, D.489 Chain C: F.137, L.138, G.139, F.140, Q.354, E.356, M.396, T.397, S.398, D.486, E.487, F.488 Ligands: 336.1, 336.2 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain C Hydrophobic interactions: B:F.488, C:F.488, C:F.488, C:F.488 Hydrogen bonds: C:Q.354, C:T.397, C:F.488

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Q. et al., Farnesyltransferase inhibitor lonafarnib suppresses respiratory syncytial virus infection by blocking conformational change of fusion glycoprotein. Signal Transduct Target Ther (2024)

Release Date

2024-06-19

Peptides

Fusion glycoprotein F0,Fibritin: ABC
D25 heavy chain: D
D25 light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Fusion glycoprotein F0,Fibritin

D25 heavy chain

D25 light chain

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