SMTL ID : 5udc.1

Crystal Structure of RSV F A2 Bound to MEDI8897

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.45 Å

Oligo State

hetero-3-3-3-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN-MAN.1: 15 residues within 4Å: Chain A: V.2, Q.23, A.24, S.25, G.26, G.27, L.28, D.31, Y.32, S.75, T.76, D.77, L.102 Chain C: K.68, N.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.28, A:D.31, A:D.31

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain C: N.63, E.294 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain F: A.346 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, Q. et al., A highly potent extended half-life antibody as a potential RSV vaccine surrogate for all infants. Sci Transl Med (2017)

Release Date

2017-05-17

Peptides

MEDI8897 Fab Heavy Chain: ADG
MEDI8897 Fab Light Chain: BEH
Fusion glycoprotein F0: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

D
B

G
E

B
L

E
C

H
G

C
F

F
A

I
D

MEDI8897 Fab Heavy Chain

MEDI8897 Fab Light Chain

Fusion glycoprotein F0

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