SMTL ID : 8kh7.1

Crystal structure of FGFR4 kinase domain with 8zc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.174, T.204, N.206, R.208 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.204, A:T.204, A:N.206 Water bridges: A:N.115 Salt bridges: A:R.174

1 x VVW: 1-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-3-[6-methanoyl-5-[(4-methyl-2-oxidanylidene-piperazin-1-yl)methyl]-3-(2-morpholin-4-ylethoxy)pyridin-2-yl]urea(Covalent)

VVW.2: 20 residues within 4Å: Chain A: L.31, V.39, R.41, T.57, A.59, K.61, I.92, V.108, E.109, C.110, A.111, A.112, K.113, G.114, N.115, E.118, R.174, L.177, D.188 Ligands: EDO.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.39 Hydrogen bonds: A:R.41, A:K.61, A:A.111, A:G.114, A:N.115 Salt bridges: A:E.118 Halogen bonds: A:L.31, A:D.188

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: R.41 Ligands: VVW.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.41, A:R.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, F. et al., Discovery of 6-Formylpyridyl Urea Derivatives as Potent Reversible-Covalent Fibroblast Growth Factor Receptor 4 Inhibitors with Improved Anti-Hepatocellular Carcinoma Activity. J.Med.Chem. (2024)

Release Date

2024-07-31

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 4

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