SMTL ID : 8kho.1

Crystal structure of human methionine aminopeptidase 12 (MAP12) in complex with two Cobalt ions and Methionine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x MET: METHIONINE(Non-covalent)

MET.1: 14 residues within 4Å: Chain A: Y.122, F.125, C.130, D.156, T.158, D.167, H.230, F.236, H.237, E.262, W.279, E.293 Ligands: CO.2, CO.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.236 Hydrogen bonds: A:T.158 Water bridges: A:D.156, A:T.158 Salt bridges: A:H.230, A:H.237

2 x CO: COBALT (II) ION(Non-covalent)

CO.2: 7 residues within 4Å: Chain A: D.167, H.230, T.260, E.262, E.293 Ligands: MET.1, CO.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.167, A:H.230, A:E.262, A:E.293 CO.3: 6 residues within 4Å: Chain A: D.156, T.158, D.167, E.293 Ligands: MET.1, CO.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.156, A:D.156, A:D.167, A:E.293

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 5 residues within 4Å: Chain A: L.32, K.273, S.283, L.284, N.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y. et al., Structural insights into N-terminal methionine cleavage by the human mitochondrial methionine aminopeptidase, MetAP1D. Sci Rep (2023)

Release Date

2024-01-24

Peptides

Methionine aminopeptidase 1D, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 1D, mitochondrial

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