SMTL ID : 8oes.1

MUC5B amino acids 26-1435 Three beads

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-8-6-mer

Ligands

24 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.882, N.1003, D.1005, N.1007, N.1010, D.1011 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.1005, A:D.1005, A:N.1007, A:D.1011 CA.2: 6 residues within 4Å: Chain A: D.64, D.184, N.186, L.188, N.192, E.193 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.184, A:D.184, A:L.188, A:E.193 CA.3: 6 residues within 4Å: Chain A: D.412, N.539, N.541, N.543, D.546, D.547 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.412, A:D.412, A:N.543, A:D.546 CA.9: 6 residues within 4Å: Chain B: D.882, N.1003, D.1005, N.1007, N.1010, D.1011 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.1005, B:D.1005, B:N.1007, B:D.1011 CA.10: 6 residues within 4Å: Chain B: D.64, D.184, N.186, L.188, N.192, E.193 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.64, B:D.184, B:D.184, B:L.188, B:E.193 CA.11: 6 residues within 4Å: Chain B: D.412, N.539, N.541, N.543, D.546, D.547 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.412, B:D.412, B:N.543, B:D.546, B:D.547 CA.17: 6 residues within 4Å: Chain C: D.882, N.1003, D.1005, N.1007, N.1010, D.1011 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.1005, C:D.1005, C:N.1007, C:D.1011 CA.18: 6 residues within 4Å: Chain C: D.64, D.184, N.186, L.188, N.192, E.193 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.184, C:D.184, C:L.188, C:E.193 CA.19: 6 residues within 4Å: Chain C: D.412, N.539, N.541, N.543, D.546, D.547 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.412, C:D.412, C:N.543, C:D.546 CA.25: 6 residues within 4Å: Chain D: D.882, N.1003, D.1005, N.1007, N.1010, D.1011 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.1005, D:D.1005, D:N.1007, D:D.1011 CA.26: 6 residues within 4Å: Chain D: D.64, D.184, N.186, L.188, N.192, E.193 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.184, D:D.184, D:L.188, D:E.193 CA.27: 6 residues within 4Å: Chain D: D.412, N.539, N.541, N.543, D.546, D.547 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.412, D:D.412, D:N.543, D:D.546 CA.32: 6 residues within 4Å: Chain E: D.64, D.184, N.186, L.188, N.192, E.193 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.64, E:D.184, E:D.184, E:L.188, E:E.193 CA.33: 6 residues within 4Å: Chain E: D.412, N.539, N.541, N.543, D.546, D.547 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.412, E:D.412, E:N.543, E:D.546, E:D.547 CA.38: 6 residues within 4Å: Chain F: D.64, D.184, N.186, L.188, N.192, E.193 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.64, F:D.184, F:D.184, F:L.188, F:E.193 CA.39: 6 residues within 4Å: Chain F: D.412, N.539, N.541, N.543, D.546, D.547 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.412, F:D.412, F:N.543, F:D.546, F:D.547 CA.44: 6 residues within 4Å: Chain G: D.882, N.1003, D.1005, N.1007, N.1010, D.1011 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.1005, G:D.1005, G:N.1007, G:D.1011 CA.45: 6 residues within 4Å: Chain H: D.882, N.1003, D.1005, N.1007, N.1010, D.1011 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.1005, H:D.1005, H:N.1007, H:D.1011 CA.46: 5 residues within 4Å: Chain I: N.13, H.15, D.25, E.27, Y.88 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.15, I:D.25, I:E.27, I:Y.88 CA.47: 5 residues within 4Å: Chain J: N.13, H.15, D.25, E.27, Y.88 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:H.15, J:D.25, J:D.25, J:E.27, J:Y.88 CA.48: 5 residues within 4Å: Chain K: N.13, H.15, D.25, E.27, Y.88 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.15, K:D.25, K:E.27, K:Y.88 CA.49: 5 residues within 4Å: Chain L: N.13, H.15, D.25, E.27, Y.88 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:H.15, L:D.25, L:E.27, L:Y.88 CA.50: 5 residues within 4Å: Chain M: N.13, H.15, D.25, E.27, Y.88 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:H.15, M:D.25, M:D.25, M:E.27, M:Y.88 CA.51: 5 residues within 4Å: Chain N: N.13, H.15, D.25, E.27, Y.88 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:H.15, N:D.25, N:D.25, N:E.27, N:Y.88

27 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.376 Ligand excluded by PLIP NAG.5: 1 residues within 4Å: Chain A: N.120 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain A: R.83, N.176 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain A: N.490 Chain C: D.461, D.464 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain A: D.903, N.904 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain B: S.374, N.376 Ligand excluded by PLIP NAG.13: 1 residues within 4Å: Chain B: N.120 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain B: R.83, N.176 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain B: N.490 Chain D: D.461, D.464 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain B: D.903, N.904 Ligand excluded by PLIP NAG.20: 1 residues within 4Å: Chain C: N.376 Ligand excluded by PLIP NAG.21: 1 residues within 4Å: Chain C: N.120 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain C: R.83, N.176 Ligand excluded by PLIP NAG.23: 3 residues within 4Å: Chain A: D.461, D.464 Chain C: N.490 Ligand excluded by PLIP NAG.24: 2 residues within 4Å: Chain C: D.903, N.904 Ligand excluded by PLIP NAG.28: 1 residues within 4Å: Chain D: N.376 Ligand excluded by PLIP NAG.29: 1 residues within 4Å: Chain D: N.120 Ligand excluded by PLIP NAG.30: 2 residues within 4Å: Chain D: R.83, N.176 Ligand excluded by PLIP NAG.31: 3 residues within 4Å: Chain B: D.461, D.464 Chain D: N.490 Ligand excluded by PLIP NAG.34: 2 residues within 4Å: Chain E: S.374, N.376 Ligand excluded by PLIP NAG.35: 1 residues within 4Å: Chain E: N.120 Ligand excluded by PLIP NAG.36: 2 residues within 4Å: Chain E: R.83, N.176 Ligand excluded by PLIP NAG.37: 1 residues within 4Å: Chain E: N.490 Ligand excluded by PLIP NAG.40: 2 residues within 4Å: Chain F: S.374, N.376 Ligand excluded by PLIP NAG.41: 1 residues within 4Å: Chain F: N.120 Ligand excluded by PLIP NAG.42: 2 residues within 4Å: Chain F: R.83, N.176 Ligand excluded by PLIP NAG.43: 1 residues within 4Å: Chain F: N.490 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khmelnitsky, L. et al., Pulmonary Fibrosis Linked to Impaired Mucin 5B Supramolecular Assembly. To Be Published

Release Date

2024-03-27

Peptides

Mucin-5B: ABCDEFGH
Mucin-5B: IJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

Mucin-5B

Mucin-5B

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