SMTL ID : 8oit.1

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x C- C- A: E-site tRNA(Non-functional Binders)

C-C-A.1: 6 residues within 4Å: Chain G: C.1229, C.1230, A.1231, G.1239, A.1240, A.1249 Protein-ligand interaction information (PLIP) not available

34 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)

K.2: 3 residues within 4Å: Chain G: A.925, G.926, G.966 Ligand excluded by PLIP K.3: 3 residues within 4Å: Chain G: U.108, A.109, A.125 Ligand excluded by PLIP K.4: 6 residues within 4Å: Chain G: A.186, U.187, U.1317, C.1318, A.1320, U.1321 Ligand excluded by PLIP K.5: 4 residues within 4Å: Chain G: A.835, G.973, A.974, G.975 Ligand excluded by PLIP K.6: 5 residues within 4Å: Chain G: G.345, U.368, A.369, G.370, U.1061 Ligand excluded by PLIP K.7: 3 residues within 4Å: Chain G: A.594, A.595, U.596 Ligand excluded by PLIP K.8: 5 residues within 4Å: Chain G: C.879, U.882, G.883, U.891, U.892 Ligand excluded by PLIP K.9: 3 residues within 4Å: Chain G: U.929, A.930 Ligands: MG.208 Ligand excluded by PLIP K.10: 3 residues within 4Å: Chain G: A.834, A.835, A.974 Ligand excluded by PLIP K.11: 4 residues within 4Å: Chain G: A.1044, G.1046, A.1394, A.1431 Ligand excluded by PLIP K.12: 5 residues within 4Å: Chain G: C.176, U.177, U.187, G.188, G.349 Ligand excluded by PLIP K.13: 3 residues within 4Å: Chain G: U.991, A.992, U.1484 Ligand excluded by PLIP K.14: 4 residues within 4Å: Chain G: C.366, A.1244, C.1245, G.1247 Ligand excluded by PLIP K.15: 5 residues within 4Å: Chain G: A.439, C.441, C.1274, A.1311, C.1312 Ligand excluded by PLIP K.16: 4 residues within 4Å: Chain G: C.670, C.671, G.673, A.754 Ligand excluded by PLIP K.17: 5 residues within 4Å: Chain G: U.939, U.940, G.951, G.952, A.953 Ligand excluded by PLIP K.18: 4 residues within 4Å: Chain G: G.1144, G.1145, G.1313, A.1314 Ligand excluded by PLIP K.19: 4 residues within 4Å: Chain G: G.1054, G.1264, C.1318, U.1321 Ligand excluded by PLIP K.20: 3 residues within 4Å: Chain 2: H.181, L.183 Chain G: A.1302 Ligand excluded by PLIP K.21: 5 residues within 4Å: Chain G: A.1510, U.1511, A.1512, A.1515, U.1516 Ligand excluded by PLIP K.22: 5 residues within 4Å: Chain G: C.182, A.186, A.1023, C.1316, U.1317 Ligand excluded by PLIP K.23: 4 residues within 4Å: Chain G: A.247, G.248, G.311, G.312 Ligand excluded by PLIP K.24: 4 residues within 4Å: Chain G: C.289, A.290, C.763, G.765 Ligand excluded by PLIP K.25: 3 residues within 4Å: Chain G: U.347, G.348, G.1263 Ligand excluded by PLIP K.26: 4 residues within 4Å: Chain G: A.510, A.511, C.513, A.514 Ligand excluded by PLIP K.27: 5 residues within 4Å: Chain G: C.806, G.807, U.1369, G.1370, U.1371 Ligand excluded by PLIP K.28: 4 residues within 4Å: Chain G: U.184, A.185, A.186, A.1024 Ligand excluded by PLIP K.29: 3 residues within 4Å: Chain G: U.1015, C.1433, U.1434 Ligand excluded by PLIP K.30: 2 residues within 4Å: Chain G: A.1359, G.1362 Ligand excluded by PLIP K.31: 6 residues within 4Å: Chain G: A.200 Chain S: Y.96 Chain w: F.121, H.124, F.127, R.128 Ligand excluded by PLIP K.251: 3 residues within 4Å: Chain T: Y.131, D.132, R.135 Ligand excluded by PLIP K.258: 4 residues within 4Å: Chain 1: R.43, R.44, G.46, R.47 Ligand excluded by PLIP K.261: 4 residues within 4Å: Chain c: P.13, R.15, I.18, H.21 Ligand excluded by PLIP K.264: 5 residues within 4Å: Chain 4: F.48, T.49 Chain k: D.222, G.223, H.224 Ligand excluded by PLIP

228 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.32: 4 residues within 4Å: Chain G: G.49, C.50, U.1136, U.1137 No protein-ligand interaction detected (PLIP) MG.33: 3 residues within 4Å: Chain G: C.51, C.56, G.1063 No protein-ligand interaction detected (PLIP) MG.34: 3 residues within 4Å: Chain G: A.87, U.88, U.89 No protein-ligand interaction detected (PLIP) MG.35: 4 residues within 4Å: Chain G: G.106, U.108 Chain V: G.148, G.149 No protein-ligand interaction detected (PLIP) MG.36: 2 residues within 4Å: Chain G: G.106, A.109 No protein-ligand interaction detected (PLIP) MG.37: 3 residues within 4Å: Chain G: A.144, A.145, G.146 No protein-ligand interaction detected (PLIP) MG.38: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.39: 4 residues within 4Å: Chain G: U.177, U.178, G.349, U.350 No protein-ligand interaction detected (PLIP) MG.40: 2 residues within 4Å: Chain G: U.445, C.1315 No protein-ligand interaction detected (PLIP) MG.41: 2 residues within 4Å: Chain G: U.187, A.1320 No protein-ligand interaction detected (PLIP) MG.42: 1 residues within 4Å: Chain G: A.344 No protein-ligand interaction detected (PLIP) MG.43: 2 residues within 4Å: Chain G: A.237, A.342 No protein-ligand interaction detected (PLIP) MG.44: 3 residues within 4Å: Chain G: A.247, G.248, G.311 No protein-ligand interaction detected (PLIP) MG.45: 3 residues within 4Å: Chain G: C.249, A.308, U.309 No protein-ligand interaction detected (PLIP) MG.46: 2 residues within 4Å: Chain G: A.251, C.252 No protein-ligand interaction detected (PLIP) MG.47: 2 residues within 4Å: Chain G: A.261, G.262 No protein-ligand interaction detected (PLIP) MG.48: 3 residues within 4Å: Chain G: A.270, G.271, A.301 No protein-ligand interaction detected (PLIP) MG.49: 2 residues within 4Å: Chain G: C.272, A.301 No protein-ligand interaction detected (PLIP) MG.50: 3 residues within 4Å: Chain G: U.280, A.833, A.834 No protein-ligand interaction detected (PLIP) MG.51: 3 residues within 4Å: Chain G: U.280, C.281, G.1424 No protein-ligand interaction detected (PLIP) MG.52: 2 residues within 4Å: Chain G: U.286, U.1428 No protein-ligand interaction detected (PLIP) MG.53: 4 residues within 4Å: Chain G: C.322, A.323, A.324, A.1406 No protein-ligand interaction detected (PLIP) MG.54: 2 residues within 4Å: Chain G: A.324, G.1405 No protein-ligand interaction detected (PLIP) MG.55: 2 residues within 4Å: Chain G: A.1404, G.1405 No protein-ligand interaction detected (PLIP) MG.56: 2 residues within 4Å: Chain G: G.341 Chain V: G.122 No protein-ligand interaction detected (PLIP) MG.57: 1 residues within 4Å: Chain G: G.370 No protein-ligand interaction detected (PLIP) MG.58: 3 residues within 4Å: Chain G: C.388, C.389, C.409 No protein-ligand interaction detected (PLIP) MG.59: 3 residues within 4Å: Chain G: C.430, C.444, U.445 No protein-ligand interaction detected (PLIP) MG.60: 1 residues within 4Å: Chain X: S.30 No protein-ligand interaction detected (PLIP) MG.61: 2 residues within 4Å: Chain G: A.472, C.589 No protein-ligand interaction detected (PLIP) MG.62: 4 residues within 4Å: Chain G: U.471, A.472, C.582, U.583 No protein-ligand interaction detected (PLIP) MG.63: 1 residues within 4Å: Chain G: A.543 No protein-ligand interaction detected (PLIP) MG.64: 3 residues within 4Å: Chain 6: R.65 Chain G: U.480, A.580 No protein-ligand interaction detected (PLIP) MG.65: 3 residues within 4Å: Chain G: A.357, G.358, C.593 No protein-ligand interaction detected (PLIP) MG.66: 1 residues within 4Å: Chain G: A.618 No protein-ligand interaction detected (PLIP) MG.67: 3 residues within 4Å: Chain G: A.197, A.623, A.624 No protein-ligand interaction detected (PLIP) MG.68: 1 residues within 4Å: Chain G: A.194 No protein-ligand interaction detected (PLIP) MG.69: 3 residues within 4Å: Chain G: A.639, U.641, U.1432 No protein-ligand interaction detected (PLIP) MG.70: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.71: 3 residues within 4Å: Chain G: A.642, A.643, A.998 No protein-ligand interaction detected (PLIP) MG.72: 1 residues within 4Å: Chain G: U.641 No protein-ligand interaction detected (PLIP) MG.73: 2 residues within 4Å: Chain G: U.666, C.753 No protein-ligand interaction detected (PLIP) MG.74: 1 residues within 4Å: Chain G: C.705 No protein-ligand interaction detected (PLIP) MG.75: 5 residues within 4Å: Chain G: G.647, A.780, A.781, A.782, G.783 No protein-ligand interaction detected (PLIP) MG.76: 1 residues within 4Å: Chain G: A.782 No protein-ligand interaction detected (PLIP) MG.77: 1 residues within 4Å: Chain G: G.783 No protein-ligand interaction detected (PLIP) MG.78: 1 residues within 4Å: Chain G: A.787 No protein-ligand interaction detected (PLIP) MG.79: 3 residues within 4Å: Chain 5: S.230 Chain G: A.798, A.799 No protein-ligand interaction detected (PLIP) MG.80: 2 residues within 4Å: Chain G: A.802, G.982 No protein-ligand interaction detected (PLIP) MG.81: 5 residues within 4Å: Chain G: A.803, C.804, U.805, U.1367, U.1368 No protein-ligand interaction detected (PLIP) MG.82: 1 residues within 4Å: Chain G: U.1368 No protein-ligand interaction detected (PLIP) MG.83: 3 residues within 4Å: Chain G: C.804, U.805, U.1367 No protein-ligand interaction detected (PLIP) MG.84: 2 residues within 4Å: Chain G: C.809, A.810 No protein-ligand interaction detected (PLIP) MG.85: 2 residues within 4Å: Chain G: G.822, C.824 No protein-ligand interaction detected (PLIP) MG.86: 2 residues within 4Å: Chain G: G.826, A.974 No protein-ligand interaction detected (PLIP) MG.87: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.88: 3 residues within 4Å: Chain G: A.830, C.832, A.833 No protein-ligand interaction detected (PLIP) MG.89: 1 residues within 4Å: Chain G: C.838 No protein-ligand interaction detected (PLIP) MG.90: 3 residues within 4Å: Chain G: A.839, G.867, C.868 No protein-ligand interaction detected (PLIP) MG.91: 4 residues within 4Å: Chain G: U.875, G.876, A.894, A.963 No protein-ligand interaction detected (PLIP) MG.92: 1 residues within 4Å: Chain G: U.944 No protein-ligand interaction detected (PLIP) MG.93: 2 residues within 4Å: Chain G: G.961, G.1409 No protein-ligand interaction detected (PLIP) MG.94: 1 residues within 4Å: Chain G: G.975 No protein-ligand interaction detected (PLIP) MG.95: 5 residues within 4Å: Chain G: A.798, A.799, G.800, G.801, G.985 No protein-ligand interaction detected (PLIP) MG.96: 1 residues within 4Å: Chain G: U.990 No protein-ligand interaction detected (PLIP) MG.97: 1 residues within 4Å: Chain G: U.1010 No protein-ligand interaction detected (PLIP) MG.98: 3 residues within 4Å: Chain G: G.1020, U.1021, A.1026 No protein-ligand interaction detected (PLIP) MG.99: 1 residues within 4Å: Chain G: U.1395 No protein-ligand interaction detected (PLIP) MG.100: 4 residues within 4Å: Chain G: G.1046, U.1392, G.1393, A.1394 No protein-ligand interaction detected (PLIP) MG.101: 3 residues within 4Å: Chain G: A.1055, U.1260, A.1261 No protein-ligand interaction detected (PLIP) MG.102: 3 residues within 4Å: Chain G: U.1059, U.1142, U.1143 No protein-ligand interaction detected (PLIP) MG.103: 5 residues within 4Å: Chain G: C.55, U.1061, G.1062, G.1063, U.1138 No protein-ligand interaction detected (PLIP) MG.104: 3 residues within 4Å: Chain G: U.1143, G.1145, G.1147 No protein-ligand interaction detected (PLIP) MG.105: 1 residues within 4Å: Chain G: G.1149 No protein-ligand interaction detected (PLIP) MG.106: 2 residues within 4Å: Chain G: A.1157 Chain L: G.44 No protein-ligand interaction detected (PLIP) MG.107: 1 residues within 4Å: Chain G: A.1167 No protein-ligand interaction detected (PLIP) MG.108: 3 residues within 4Å: Chain G: U.1194, A.1196, C.1197 No protein-ligand interaction detected (PLIP) MG.109: 2 residues within 4Å: Chain G: C.1154, G.1246 No protein-ligand interaction detected (PLIP) MG.110: 1 residues within 4Å: Chain G: A.1205 No protein-ligand interaction detected (PLIP) MG.111: 2 residues within 4Å: Chain G: G.1264, G.1319 No protein-ligand interaction detected (PLIP) MG.112: 5 residues within 4Å: Chain G: G.1264, A.1265, A.1314, C.1315, C.1316 No protein-ligand interaction detected (PLIP) MG.113: 4 residues within 4Å: Chain G: U.180, G.181, A.1265, C.1316 No protein-ligand interaction detected (PLIP) MG.114: 1 residues within 4Å: Chain G: G.1313 No protein-ligand interaction detected (PLIP) MG.115: 1 residues within 4Å: Chain G: A.1288 No protein-ligand interaction detected (PLIP) MG.116: 2 residues within 4Å: Chain G: A.1275, G.1307 No protein-ligand interaction detected (PLIP) MG.117: 2 residues within 4Å: Chain G: A.1335, A.1358 No protein-ligand interaction detected (PLIP) MG.118: 4 residues within 4Å: Chain G: U.1324, C.1390, G.1391, U.1392 No protein-ligand interaction detected (PLIP) MG.119: 2 residues within 4Å: Chain G: C.1396, U.1428 No protein-ligand interaction detected (PLIP) MG.120: 4 residues within 4Å: Chain G: G.1398, A.1399, G.1400, U.1401 No protein-ligand interaction detected (PLIP) MG.121: 3 residues within 4Å: Chain G: G.1400, U.1401, G.1425 No protein-ligand interaction detected (PLIP) MG.122: 5 residues within 4Å: Chain G: G.1509, A.1510, C.1514, A.1515 Ligands: MG.214 No protein-ligand interaction detected (PLIP) MG.123: 4 residues within 4Å: Chain G: A.290, A.291, A.759, A.760 No protein-ligand interaction detected (PLIP) MG.124: 4 residues within 4Å: Chain G: U.365, C.366, G.1247, A.1248 No protein-ligand interaction detected (PLIP) MG.125: 4 residues within 4Å: Chain G: U.365, C.1245, G.1246, G.1247 No protein-ligand interaction detected (PLIP) MG.126: 2 residues within 4Å: Chain G: G.370, A.427 No protein-ligand interaction detected (PLIP) MG.127: 2 residues within 4Å: Chain G: A.703, U.752 No protein-ligand interaction detected (PLIP) MG.128: 1 residues within 4Å: Chain G: A.1466 No protein-ligand interaction detected (PLIP) MG.129: 3 residues within 4Å: Chain G: U.523, A.526 Chain a: R.119 No protein-ligand interaction detected (PLIP) MG.130: 4 residues within 4Å: Chain G: A.52, A.53, C.55, C.56 No protein-ligand interaction detected (PLIP) MG.131: 2 residues within 4Å: Chain G: U.924, A.925 No protein-ligand interaction detected (PLIP) MG.132: 2 residues within 4Å: Chain G: A.200, C.232 No protein-ligand interaction detected (PLIP) MG.133: 2 residues within 4Å: Chain G: A.242, A.316 No protein-ligand interaction detected (PLIP) MG.134: 1 residues within 4Å: Chain G: A.255 No protein-ligand interaction detected (PLIP) MG.135: 2 residues within 4Å: Chain G: C.366, A.1244 No protein-ligand interaction detected (PLIP) MG.136: 3 residues within 4Å: Chain G: A.511, G.512, C.513 No protein-ligand interaction detected (PLIP) MG.137: 3 residues within 4Å: Chain G: A.603, A.604, A.616 No protein-ligand interaction detected (PLIP) MG.138: 2 residues within 4Å: Chain G: G.1409, G.1410 No protein-ligand interaction detected (PLIP) MG.139: 5 residues within 4Å: Chain 3: H.11 Chain G: A.1547, A.1548, G.1549 Chain U: G.212 2 PLIP interactions: 1 interactions with chain 3, 1 interactions with chain U Metal complexes: 3:H.11, U:G.212 MG.140: 1 residues within 4Å: Chain G: U.501 No protein-ligand interaction detected (PLIP) MG.141: 3 residues within 4Å: Chain G: A.514, G.533, U.534 No protein-ligand interaction detected (PLIP) MG.142: 4 residues within 4Å: Chain G: G.923, U.960, G.961, G.1410 No protein-ligand interaction detected (PLIP) MG.143: 4 residues within 4Å: Chain G: G.1025, C.1048, A.1270, C.1316 No protein-ligand interaction detected (PLIP) MG.144: 3 residues within 4Å: Chain G: G.1054, G.1262, G.1319 No protein-ligand interaction detected (PLIP) MG.145: 2 residues within 4Å: Chain G: U.1508, U.1516 No protein-ligand interaction detected (PLIP) MG.146: 1 residues within 4Å: Chain G: A.538 No protein-ligand interaction detected (PLIP) MG.147: 3 residues within 4Å: Chain G: A.627, A.628, G.630 No protein-ligand interaction detected (PLIP) MG.148: 2 residues within 4Å: Chain G: C.933, A.934 No protein-ligand interaction detected (PLIP) MG.149: 2 residues within 4Å: Chain G: A.183, A.464 No protein-ligand interaction detected (PLIP) MG.150: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.151: 3 residues within 4Å: Chain G: U.350, U.351, A.627 No protein-ligand interaction detected (PLIP) MG.152: 3 residues within 4Å: Chain G: G.1271, C.1272, U.1308 No protein-ligand interaction detected (PLIP) MG.153: 2 residues within 4Å: Chain G: C.277, C.767 No protein-ligand interaction detected (PLIP) MG.154: 1 residues within 4Å: Chain R: G.50 No protein-ligand interaction detected (PLIP) MG.155: 3 residues within 4Å: Chain G: A.998, A.999, G.1042 No protein-ligand interaction detected (PLIP) MG.156: 3 residues within 4Å: Chain G: U.328, A.329, G.334 No protein-ligand interaction detected (PLIP) MG.157: 1 residues within 4Å: Chain G: G.338 No protein-ligand interaction detected (PLIP) MG.158: 3 residues within 4Å: Chain G: C.870, C.871, G.965 No protein-ligand interaction detected (PLIP) MG.159: 2 residues within 4Å: Chain G: A.1330, G.1331 No protein-ligand interaction detected (PLIP) MG.160: 1 residues within 4Å: Chain G: G.778 No protein-ligand interaction detected (PLIP) MG.161: 2 residues within 4Å: Chain G: A.185, U.187 No protein-ligand interaction detected (PLIP) MG.162: 2 residues within 4Å: Chain G: G.1049, A.1050 No protein-ligand interaction detected (PLIP) MG.163: 3 residues within 4Å: Chain G: G.279, U.829, A.834 No protein-ligand interaction detected (PLIP) MG.164: 2 residues within 4Å: Chain G: C.896, G.897 No protein-ligand interaction detected (PLIP) MG.165: 5 residues within 4Å: Chain G: A.283, U.284, A.792 Chain U: Q.233, H.237 1 PLIP interactions: 1 interactions with chain U Metal complexes: U:H.237 MG.166: 2 residues within 4Å: Chain G: G.1022 Chain c: G.14 1 PLIP interactions: 1 interactions with chain c Metal complexes: c:G.14 MG.167: 2 residues within 4Å: Chain G: G.1031, G.1032 No protein-ligand interaction detected (PLIP) MG.168: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.169: 1 residues within 4Å: Chain G: A.344 No protein-ligand interaction detected (PLIP) MG.170: 3 residues within 4Å: Chain G: U.1009, A.1052 Chain V: G.134 No protein-ligand interaction detected (PLIP) MG.171: 4 residues within 4Å: Chain G: C.838, C.868, G.965 Ligands: MG.254 No protein-ligand interaction detected (PLIP) MG.172: 3 residues within 4Å: Chain G: A.639, G.640 Chain I: D.79 No protein-ligand interaction detected (PLIP) MG.173: 2 residues within 4Å: Chain G: G.1161, A.1162 No protein-ligand interaction detected (PLIP) MG.174: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.175: 1 residues within 4Å: Chain G: G.1477 No protein-ligand interaction detected (PLIP) MG.176: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.177: 2 residues within 4Å: Chain G: U.1125, G.1126 No protein-ligand interaction detected (PLIP) MG.178: 1 residues within 4Å: Chain G: G.475 No protein-ligand interaction detected (PLIP) MG.179: 1 residues within 4Å: Chain G: G.765 No protein-ligand interaction detected (PLIP) MG.180: 2 residues within 4Å: Chain G: A.790, A.791 No protein-ligand interaction detected (PLIP) MG.181: 1 residues within 4Å: Chain G: G.451 No protein-ligand interaction detected (PLIP) MG.182: 1 residues within 4Å: Chain G: A.796 No protein-ligand interaction detected (PLIP) MG.183: 3 residues within 4Å: Chain G: U.637, A.1008, U.1009 No protein-ligand interaction detected (PLIP) MG.184: 1 residues within 4Å: Chain G: A.283 No protein-ligand interaction detected (PLIP) MG.185: 1 residues within 4Å: Chain n: A.15 No protein-ligand interaction detected (PLIP) MG.186: 3 residues within 4Å: Chain G: G.77, C.79 Chain S: D.112 No protein-ligand interaction detected (PLIP) MG.187: 1 residues within 4Å: Chain G: A.665 No protein-ligand interaction detected (PLIP) MG.188: 2 residues within 4Å: Chain G: A.1075 Chain M: L.101 No protein-ligand interaction detected (PLIP) MG.189: 1 residues within 4Å: Chain G: G.864 No protein-ligand interaction detected (PLIP) MG.190: 2 residues within 4Å: Chain G: G.1140, G.1141 No protein-ligand interaction detected (PLIP) MG.191: 1 residues within 4Å: Chain G: C.28 No protein-ligand interaction detected (PLIP) MG.192: 2 residues within 4Å: Chain G: A.1006, A.1007 No protein-ligand interaction detected (PLIP) MG.193: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.194: 3 residues within 4Å: Chain G: U.306, U.827, U.828 No protein-ligand interaction detected (PLIP) MG.195: 3 residues within 4Å: Chain G: A.155, U.1015, G.1016 No protein-ligand interaction detected (PLIP) MG.196: 3 residues within 4Å: Chain G: A.1327, U.1328, U.1392 No protein-ligand interaction detected (PLIP) MG.197: 1 residues within 4Å: Chain G: U.1059 No protein-ligand interaction detected (PLIP) MG.198: 3 residues within 4Å: Chain G: C.1056, C.1057, A.1256 No protein-ligand interaction detected (PLIP) MG.199: 3 residues within 4Å: Chain G: G.822, A.869, G.965 No protein-ligand interaction detected (PLIP) MG.200: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.201: 1 residues within 4Å: Chain G: A.1268 No protein-ligand interaction detected (PLIP) MG.202: 1 residues within 4Å: Chain G: C.388 No protein-ligand interaction detected (PLIP) MG.203: 3 residues within 4Å: Chain G: U.367, U.368, U.1061 No protein-ligand interaction detected (PLIP) MG.204: 1 residues within 4Å: Chain G: A.931 No protein-ligand interaction detected (PLIP) MG.205: 2 residues within 4Å: Chain G: A.462, A.463 No protein-ligand interaction detected (PLIP) MG.206: 3 residues within 4Å: Chain G: C.879, A.880, U.891 No protein-ligand interaction detected (PLIP) MG.207: 1 residues within 4Å: Chain G: U.423 No protein-ligand interaction detected (PLIP) MG.208: 3 residues within 4Å: Chain G: U.929, G.952 Ligands: K.9 No protein-ligand interaction detected (PLIP) MG.209: 1 residues within 4Å: Chain G: G.647 No protein-ligand interaction detected (PLIP) MG.210: 1 residues within 4Å: Chain G: A.1335 No protein-ligand interaction detected (PLIP) MG.211: 2 residues within 4Å: Chain G: U.1345, C.1347 No protein-ligand interaction detected (PLIP) MG.212: 2 residues within 4Å: Chain G: C.1164, C.1165 No protein-ligand interaction detected (PLIP) MG.213: 2 residues within 4Å: Chain G: A.57, U.58 No protein-ligand interaction detected (PLIP) MG.214: 4 residues within 4Å: Chain G: A.1510, U.1513, C.1514 Ligands: MG.122 No protein-ligand interaction detected (PLIP) MG.215: 3 residues within 4Å: Chain G: U.1516, C.1517 Chain i: K.93 No protein-ligand interaction detected (PLIP) MG.216: 1 residues within 4Å: Chain G: A.529 No protein-ligand interaction detected (PLIP) MG.217: 1 residues within 4Å: Chain G: G.669 No protein-ligand interaction detected (PLIP) MG.218: 1 residues within 4Å: Chain G: A.155 No protein-ligand interaction detected (PLIP) MG.219: 1 residues within 4Å: Chain G: A.1248 No protein-ligand interaction detected (PLIP) MG.220: 2 residues within 4Å: Chain G: C.12, A.107 No protein-ligand interaction detected (PLIP) MG.221: 2 residues within 4Å: Chain G: U.1067, U.1137 No protein-ligand interaction detected (PLIP) MG.222: 3 residues within 4Å: Chain G: C.566, A.567, G.1032 No protein-ligand interaction detected (PLIP) MG.223: 5 residues within 4Å: Chain G: U.488, U.489 Chain f: R.153, W.154, P.179 No protein-ligand interaction detected (PLIP) MG.224: 3 residues within 4Å: Chain 1: R.59 Chain G: C.233, C.234 No protein-ligand interaction detected (PLIP) MG.225: 1 residues within 4Å: Chain G: A.1304 No protein-ligand interaction detected (PLIP) MG.226: 1 residues within 4Å: Chain G: A.1041 No protein-ligand interaction detected (PLIP) MG.227: 4 residues within 4Å: Chain G: C.1339, A.1360, U.1444, U.1445 No protein-ligand interaction detected (PLIP) MG.228: 1 residues within 4Å: Chain G: C.231 No protein-ligand interaction detected (PLIP) MG.229: 1 residues within 4Å: Chain G: A.172 No protein-ligand interaction detected (PLIP) MG.230: 4 residues within 4Å: Chain G: U.1324, G.1325, G.1326, U.1397 No protein-ligand interaction detected (PLIP) MG.231: 1 residues within 4Å: Chain G: U.1427 No protein-ligand interaction detected (PLIP) MG.232: 2 residues within 4Å: Chain G: A.190, U.191 No protein-ligand interaction detected (PLIP) MG.233: 2 residues within 4Å: Chain G: U.1009, U.1010 No protein-ligand interaction detected (PLIP) MG.234: 1 residues within 4Å: Chain G: G.696 No protein-ligand interaction detected (PLIP) MG.235: 4 residues within 4Å: Chain G: C.1292, U.1294, G.1346 Chain i: R.97 No protein-ligand interaction detected (PLIP) MG.236: 1 residues within 4Å: Chain G: A.185 No protein-ligand interaction detected (PLIP) MG.237: 5 residues within 4Å: Chain G: A.270, G.300, A.301, U.825, G.826 No protein-ligand interaction detected (PLIP) MG.238: 2 residues within 4Å: Chain G: G.112 Chain R: K.85 No protein-ligand interaction detected (PLIP) MG.239: 2 residues within 4Å: Chain G: A.109 Chain N: R.222 No protein-ligand interaction detected (PLIP) MG.240: 2 residues within 4Å: Chain G: G.345, U.1061 No protein-ligand interaction detected (PLIP) MG.241: 3 residues within 4Å: Chain G: G.332, A.333, C.1258 No protein-ligand interaction detected (PLIP) MG.242: 1 residues within 4Å: Chain G: G.1032 No protein-ligand interaction detected (PLIP) MG.243: 2 residues within 4Å: Chain G: C.1541, C.1542 No protein-ligand interaction detected (PLIP) MG.244: 4 residues within 4Å: Chain G: C.1418, G.1420 Chain x: A.68, C.69 No protein-ligand interaction detected (PLIP) MG.245: 3 residues within 4Å: Chain G: C.235, U.629 Chain V: R.137 No protein-ligand interaction detected (PLIP) MG.246: 3 residues within 4Å: Chain G: U.701, U.752 Chain J: V.72 No protein-ligand interaction detected (PLIP) MG.247: 2 residues within 4Å: Chain G: A.172, A.462 No protein-ligand interaction detected (PLIP) MG.249: 2 residues within 4Å: Chain G: G.1156 Chain L: R.49 No protein-ligand interaction detected (PLIP) MG.252: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.253: 1 residues within 4Å: Chain T: N.271 No protein-ligand interaction detected (PLIP) MG.254: 3 residues within 4Å: Chain G: C.868, U.964 Ligands: MG.171 No protein-ligand interaction detected (PLIP) MG.255: 4 residues within 4Å: Chain G: G.341 Chain V: T.116, A.118 Chain w: R.113 1 PLIP interactions: 1 interactions with chain V Metal complexes: V:T.116 MG.256: 2 residues within 4Å: Chain G: C.64 Chain W: R.72 No protein-ligand interaction detected (PLIP) MG.257: 3 residues within 4Å: Chain G: U.1035 Chain Z: Y.109, R.119 No protein-ligand interaction detected (PLIP) MG.259: 3 residues within 4Å: Chain 1: R.64, Y.75 Chain G: G.80 No protein-ligand interaction detected (PLIP) MG.260: 4 residues within 4Å: Chain 3: S.10 Chain G: A.787, A.1547, G.1549 2 PLIP interactions: 2 interactions with chain 3 Metal complexes: 3:S.10, 3:S.10 MG.265: 2 residues within 4Å: Chain G: G.224 Chain u: D.99 1 PLIP interactions: 1 interactions with chain u Metal complexes: u:D.99 MG.267: 2 residues within 4Å: Chain G: A.1419 Chain x: C.70 No protein-ligand interaction detected (PLIP) MG.268: 3 residues within 4Å: Chain G: A.1419, G.1421 Chain y: A.310 No protein-ligand interaction detected (PLIP)

1 x VAL: VALINE(Non-covalent)

VAL.248: 5 residues within 4Å: Chain H: A.72 Chain s: G.166, F.217, P.218, M.221 1 PLIP interactions: 1 interactions with chain s Hydrophobic interactions: s:F.217

2 x ZN: ZINC ION(Non-covalent)

ZN.250: 4 residues within 4Å: Chain P: C.110, C.113, C.123, C.126 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:C.110, P:C.113, P:C.123, P:C.126 ZN.263: 4 residues within 4Å: Chain i: C.76, C.79, C.92, H.98 4 PLIP interactions: 4 interactions with chain i Metal complexes: i:C.76, i:C.79, i:C.92, i:H.98

1 x FS2: FE-S-O HYBRID CLUSTER(Non-covalent)

FS2.262: 7 residues within 4Å: Chain X: S.63, C.64 Chain f: C.70, C.73, K.78, C.108, E.111 4 PLIP interactions: 3 interactions with chain f, 1 interactions with chain X, Metal complexes: f:C.70, f:C.73, f:C.108, X:C.64

1 x MET: METHIONINE(Non-covalent)

MET.266: 4 residues within 4Å: Chain G: C.1056, U.1402 Chain x: A.71 Chain y: Q.313 1 PLIP interactions: 1 interactions with chain y Hydrogen bonds: y:Q.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saurer, M. et al., Molecular basis of translation termination at noncanonical stop codons in human mitochondria. Science (2023)

Release Date

2023-06-14

Peptides

39S ribosomal protein L12, mitochondrial: ABCDEF
39S ribosomal protein L22, mitochondrial: I
39S ribosomal protein L23, mitochondrial: J
39S ribosomal protein L24, mitochondrial: K
39S ribosomal protein L27, mitochondrial: L
39S ribosomal protein L28, mitochondrial: M
39S ribosomal protein L47, mitochondrial: N
39S ribosomal protein L30, mitochondrial: O
39S ribosomal protein L32, mitochondrial: P
39S ribosomal protein L33, mitochondrial: Q
39S ribosomal protein L34, mitochondrial: R
39S ribosomal protein L35, mitochondrial: S
39S ribosomal protein L2, mitochondrial: T
39S ribosomal protein L3, mitochondrial: U
39S ribosomal protein L4, mitochondrial: V
39S ribosomal protein L9, mitochondrial: W
39S ribosomal protein L10, mitochondrial: X
39S ribosomal protein L11, mitochondrial: Y
39S ribosomal protein L13, mitochondrial: Z
39S ribosomal protein L14, mitochondrial: 0
39S ribosomal protein L15, mitochondrial: 1
39S ribosomal protein L16, mitochondrial: 2
39S ribosomal protein L17, mitochondrial: 3
39S ribosomal protein L18, mitochondrial: 4
39S ribosomal protein L19, mitochondrial: 5
39S ribosomal protein L20, mitochondrial: 6
39S ribosomal protein L21, mitochondrial: 7
39S ribosomal protein L52, mitochondrial: 8
39S ribosomal protein L53, mitochondrial: 9
39S ribosomal protein L54, mitochondrial: a
39S ribosomal protein L55, mitochondrial: b
Ribosomal protein 63, mitochondrial: c
Peptidyl-tRNA hydrolase ICT1, mitochondrial: d
Growth arrest and DNA damage-inducible proteins-interacting protein 1: e
39S ribosomal protein S18a, mitochondrial: f
39S ribosomal protein S30, mitochondrial: g
39S ribosomal protein L1, mitochondrial: h
39S ribosomal protein L36, mitochondrial: i
39S ribosomal protein L37, mitochondrial: j
39S ribosomal protein L38, mitochondrial: k
39S ribosomal protein L39, mitochondrial: l
39S ribosomal protein L40, mitochondrial: m
39S ribosomal protein L41, mitochondrial: n
39S ribosomal protein L42, mitochondrial: o
Large ribosomal subunit protein mL43: p
39S ribosomal protein L44, mitochondrial: q
39S ribosomal protein L45, mitochondrial: r
39S ribosomal protein L46, mitochondrial: s
39S ribosomal protein L48, mitochondrial: t
39S ribosomal protein L49, mitochondrial: u
39S ribosomal protein L50, mitochondrial: v
39S ribosomal protein L51, mitochondrial: w
Peptide chain release factor 1, mitochondrial: y

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B1

B
B2

C
B3

D
B4

E
B5

F
B6

I
BA

J
BB

K
BC

L
BD

M
BE

N
BF

O
BG

P
BH

Q
BI

R
BJ

S
BK

T
BL

U
BM

V
BN

W
BO

X
BP

Y
BQ

Z
BR

0
BS

1
BT

2
BU

3
BV

4
BW

5
BX

6
BY

7
BZ

8
Ba

9
Bb

a
Bc

b
Bd

c
Be

d
Bf

e
Bg

f
Bh

g
Bi

h
Bj

i
Bl

j
Bm

k
Bn

l
Bo

m
Bp

n
Bq

o
Br

p
Bs

q
Bt

r
Bu

s
Bv

t
Bw

u
Bx

v
By

w
Bz

y
Aa

39S ribosomal protein L12, mitochondrial

39S ribosomal protein L22, mitochondrial

39S ribosomal protein L23, mitochondrial

39S ribosomal protein L24, mitochondrial

39S ribosomal protein L27, mitochondrial

39S ribosomal protein L28, mitochondrial

39S ribosomal protein L47, mitochondrial

39S ribosomal protein L30, mitochondrial

39S ribosomal protein L32, mitochondrial

39S ribosomal protein L33, mitochondrial

39S ribosomal protein L34, mitochondrial

39S ribosomal protein L35, mitochondrial

39S ribosomal protein L2, mitochondrial

39S ribosomal protein L3, mitochondrial

39S ribosomal protein L4, mitochondrial

39S ribosomal protein L9, mitochondrial

39S ribosomal protein L10, mitochondrial

39S ribosomal protein L11, mitochondrial

39S ribosomal protein L13, mitochondrial

39S ribosomal protein L14, mitochondrial

39S ribosomal protein L15, mitochondrial

39S ribosomal protein L16, mitochondrial

39S ribosomal protein L17, mitochondrial

39S ribosomal protein L18, mitochondrial

39S ribosomal protein L19, mitochondrial

39S ribosomal protein L20, mitochondrial

39S ribosomal protein L21, mitochondrial

39S ribosomal protein L52, mitochondrial

39S ribosomal protein L53, mitochondrial

39S ribosomal protein L54, mitochondrial

39S ribosomal protein L55, mitochondrial

Ribosomal protein 63, mitochondrial

Peptidyl-tRNA hydrolase ICT1, mitochondrial

Growth arrest and DNA damage-inducible proteins-interacting protein 1

39S ribosomal protein S18a, mitochondrial

39S ribosomal protein S30, mitochondrial

39S ribosomal protein L1, mitochondrial

39S ribosomal protein L36, mitochondrial

39S ribosomal protein L37, mitochondrial

39S ribosomal protein L38, mitochondrial

39S ribosomal protein L39, mitochondrial

39S ribosomal protein L40, mitochondrial

39S ribosomal protein L41, mitochondrial

39S ribosomal protein L42, mitochondrial

Large ribosomal subunit protein mL43

39S ribosomal protein L44, mitochondrial

39S ribosomal protein L45, mitochondrial

39S ribosomal protein L46, mitochondrial

39S ribosomal protein L48, mitochondrial

39S ribosomal protein L49, mitochondrial

39S ribosomal protein L50, mitochondrial

39S ribosomal protein L51, mitochondrial

Peptide chain release factor 1, mitochondrial

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