SMTL ID : 8oj6.1

HSV-1 DNA polymerase-processivity factor complex in pre-translocation state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.41 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.717, F.718, D.888, E.927 Chain C: A.22 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.717, A:D.717, A:F.718, H2O.1 MG.2: 3 residues within 4Å: Chain A: D.368, Y.465, D.471 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gustavsson, E. et al., Dynamics of the Herpes simplex virus DNA polymerase holoenzyme during DNA synthesis and proof-reading revealed by Cryo-EM. To Be Published

Release Date

2024-04-03

Peptides

DNA polymerase catalytic subunit: A
DNA polymerase processivity factor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA polymerase catalytic subunit

DNA polymerase processivity factor

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