SMTL ID : 8ojc.1

HSV-1 DNA polymerase active site in alternative exonuclease state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.08 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain B: D.368, Y.465, D.471 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.368, B:Y.465, B:D.471, H2O.2, H2O.3 CA.2: 5 residues within 4Å: Chain A: A.47 Chain B: D.368, I.369, E.370, D.581 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.368, B:E.370, B:D.581

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gustavsson, E. et al., Dynamics of the Herpes simplex virus DNA polymerase holoenzyme during DNA synthesis and proof-reading revealed by Cryo-EM. To Be Published

Release Date

2024-04-03

Peptides

DNA polymerase catalytic subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

DNA polymerase catalytic subunit

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