SMTL ID : 8omj.1

hKHK-C in complex with compound 28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x VTM: [3-[[6-[(3~{a}~{R},6~{a}~{S})-2,3,3~{a},4,6,6~{a}-hexahydro-1~{H}-pyrrolo[3,4-c]pyrrol-5-yl]-3-cyano-4-(trifluoromethyl)pyridin-2-yl]amino]-4-methylsulfanyl-phenyl]methoxy-methyl-phosphinic acid(Non-covalent)

VTM.1: 19 residues within 4Å: Chain A: N.122, R.123, E.188, A.239, A.241, E.242, G.244, P.261, P.262, V.265, T.268, A.271, G.272, F.275, C.297, A.300, G.301, C.304 Chain B: D.42 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.239, A:A.271, A:F.275 Hydrogen bonds: A:R.123, A:T.268, A:A.271, A:G.272, B:D.42 Water bridges: A:G.270, A:G.270 VTM.4: 15 residues within 4Å: Chain B: A.239, A.241, E.242, G.244, A.259, P.261, P.262, V.265, T.268, A.271, G.272, F.275, A.300, G.301, C.304 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.239, B:A.241, B:E.242, B:A.271, B:F.275 Hydrogen bonds: B:G.270, B:A.271, B:G.272 Water bridges: B:F.260

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain B: R.93, R.94, G.308, F.309 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:F.309 Water bridges: B:Q.53, B:R.93, B:R.94, B:D.310 Salt bridges: B:R.93, B:R.94 SO4.3: 4 residues within 4Å: Chain A: R.46 Chain B: H.128, R.156, K.189 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Water bridges: B:K.189, B:K.189 Salt bridges: B:H.128, B:R.156, B:K.189, A:R.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heine, N. et al., Discovery of BI-9787, a potent zwitterionic ketohexokinase inhibitor with oral bioavailability. Bioorg.Med.Chem.Lett. (2024)

Release Date

2024-07-10

Peptides

Ketohexokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ketohexokinase

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