SMTL ID : 9fhe.1

hKHK-C in complex with BI-9787 (pH 5.5)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

2 x 01: (2~{S})-3-[3-[[4-[bis(fluoranyl)methyl]-3-cyano-6-[(3~{S})-3-(dimethylamino)pyrrolidin-1-yl]pyridin-2-yl]amino]-4-methylsulfanyl-phenyl]-2-methyl-propanoic acid

01.1: 24 residues within 4Å: Chain A: N.120, N.122, R.123, A.239, W.240, A.241, E.242, G.244, A.245, A.259, F.260, P.261, P.262, V.265, T.268, G.270, A.271, G.272, F.275, C.297, A.300, G.301, C.304 Chain B: D.42 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.239, A:E.242, A:T.268, A:A.271, A:F.275 Hydrogen bonds: A:T.268, A:T.268, A:A.271, A:G.272 Water bridges: A:R.123, A:R.123, A:F.260 Salt bridges: A:R.123, B:D.42 01.2: 20 residues within 4Å: Chain B: K.208, A.239, W.240, A.241, E.242, G.244, A.245, A.259, F.260, P.261, P.262, V.265, T.268, A.271, G.272, F.275, C.297, A.300, G.301, C.304 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.239, B:E.242, B:T.268, B:A.271 Hydrogen bonds: B:A.239, B:A.241 Water bridges: B:K.208, B:F.260 Salt bridges: B:E.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heine, N. et al., Discovery of BI-9787, a potent zwitterionic ketohexokinase inhibitor with oral bioavailability. Bioorg.Med.Chem.Lett. (2024)

Release Date

2024-09-04

Peptides

Ketohexokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ketohexokinase

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