- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.37 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.2: 10 residues within 4Å:- Chain A: C.39, F.41, G.42, C.47, R.57
- Chain B: C.39, C.47, R.49, P.55
- Ligands: FES.12
2 PLIP interactions:2 interactions with chain A,- Metal complexes: A:C.39, A:C.47
FES.12: 10 residues within 4Å:- Chain A: C.39, C.47, R.49, P.55
- Chain B: C.39, F.41, G.42, C.47, R.57
- Ligands: FES.2
2 PLIP interactions:2 interactions with chain B,- Metal complexes: B:C.39, B:C.47
- 2 x FE2: FE (II) ION(Non-covalent)
FE2.3: 10 residues within 4Å:- Chain A: H.261, C.295, C.526, K.563
- Ligands: H2S.4, H2S.5, FE.6, FE.8, FE.9, FE.10
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:H.261, A:C.295, H2O.1, H2O.1, H2O.20
FE2.13: 10 residues within 4Å:- Chain B: H.261, C.295, C.526, K.563
- Ligands: H2S.14, H2S.15, FE.16, FE.18, FE.19, FE.20
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:H.261, B:C.295, H2O.25, H2O.25, H2O.44
- 4 x H2S: HYDROSULFURIC ACID(Non-covalent)
H2S.4: 11 residues within 4Å:- Chain A: G.445, C.446, G.475, C.476, C.526
- Ligands: FE2.3, H2S.5, FE.6, FE.7, FE.8, FE.9
No protein-ligand interaction detected (PLIP)H2S.5: 10 residues within 4Å:- Chain A: H.261, C.294, C.295, C.333, C.476
- Ligands: FE2.3, H2S.4, FE.6, FE.9, FE.10
No protein-ligand interaction detected (PLIP)H2S.14: 11 residues within 4Å:- Chain B: G.445, C.446, G.475, C.476, C.526
- Ligands: FE2.13, H2S.15, FE.16, FE.17, FE.18, FE.19
No protein-ligand interaction detected (PLIP)H2S.15: 10 residues within 4Å:- Chain B: H.261, C.294, C.295, C.333, C.476
- Ligands: FE2.13, H2S.14, FE.16, FE.19, FE.20
No protein-ligand interaction detected (PLIP)- 10 x FE: FE (III) ION(Non-covalent)
FE.6: 11 residues within 4Å:- Chain A: H.261, C.333, H.561, K.563
- Ligands: FE2.3, H2S.4, H2S.5, FE.7, FE.8, FE.9, FE.10
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:C.333, H2O.1, H2O.18, H2O.19, H2O.20
FE.7: 8 residues within 4Å:- Chain A: C.333, C.446, M.560, H.561
- Ligands: H2S.4, FE.6, FE.8, FE.9
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:C.446, H2O.18, H2O.19, H2O.20
FE.8: 7 residues within 4Å:- Chain A: G.445, C.526, K.563
- Ligands: FE2.3, H2S.4, FE.6, FE.7
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:C.526, H2O.1, H2O.18, H2O.20, H2O.20
FE.9: 10 residues within 4Å:- Chain A: C.294, S.312, C.446, C.476
- Ligands: FE2.3, H2S.4, H2S.5, FE.6, FE.7, FE.10
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:C.476, H2O.19, H2O.19, H2O.20
FE.10: 8 residues within 4Å:- Chain A: C.294, S.312, C.333, C.476
- Ligands: FE2.3, H2S.5, FE.6, FE.9
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:C.476, H2O.19, H2O.19, H2O.20
FE.16: 11 residues within 4Å:- Chain B: H.261, C.333, H.561, K.563
- Ligands: FE2.13, H2S.14, H2S.15, FE.17, FE.18, FE.19, FE.20
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:C.333, H2O.25, H2O.42, H2O.43, H2O.44
FE.17: 8 residues within 4Å:- Chain B: C.333, C.446, M.560, H.561
- Ligands: H2S.14, FE.16, FE.18, FE.19
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:C.446, H2O.42, H2O.43, H2O.44
FE.18: 7 residues within 4Å:- Chain B: G.445, C.526, K.563
- Ligands: FE2.13, H2S.14, FE.16, FE.17
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:C.526, H2O.25, H2O.42, H2O.44, H2O.44
FE.19: 10 residues within 4Å:- Chain B: C.294, S.312, C.446, C.476
- Ligands: FE2.13, H2S.14, H2S.15, FE.16, FE.17, FE.20
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:C.476, H2O.43, H2O.43, H2O.44
FE.20: 8 residues within 4Å:- Chain B: C.294, S.312, C.333, C.476
- Ligands: FE2.13, H2S.15, FE.16, FE.19
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:C.476, H2O.43, H2O.43, H2O.44
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Basak, Y. et al., Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase. Angew.Chem.Int.Ed.Engl. (2023)
- Release Date
- 2023-12-06
- Peptides
- Carbon monoxide dehydrogenase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
X
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.37 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x FE2: FE (II) ION(Non-covalent)
- 4 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 10 x FE: FE (III) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Basak, Y. et al., Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase. Angew.Chem.Int.Ed.Engl. (2023)
- Release Date
- 2023-12-06
- Peptides
- Carbon monoxide dehydrogenase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
X