- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.2: 12 residues within 4Å:- Chain A: C.39, F.41, G.42, C.47, R.57
- Chain B: C.39, C.47, R.49, P.55
- Ligands: PEG.5, FES.8, PEG.11
2 PLIP interactions:2 interactions with chain A,- Metal complexes: A:C.39, A:C.47
FES.8: 12 residues within 4Å:- Chain A: C.39, C.47, R.49, P.55
- Chain B: C.39, F.41, G.42, C.47, R.57
- Ligands: FES.2, PEG.5, PEG.11
2 PLIP interactions:2 interactions with chain B,- Metal complexes: B:C.39, B:C.47
- 2 x VV2: Fe-S cluster(Non-covalent)
VV2.3: 13 residues within 4Å:- Chain A: H.261, S.312, C.333, G.445, C.446, G.475, C.476, C.526, M.560, H.561, K.563
- Ligands: FE2.4, FE.6
9 PLIP interactions:4 interactions with chain A, 4 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: A:C.333, A:C.446, A:C.476, A:C.526, H2O.1, H2O.13, H2O.13, H2O.13, VV2.3
VV2.9: 13 residues within 4Å:- Chain B: H.261, S.312, C.333, G.445, C.446, G.475, C.476, C.526, M.560, H.561, K.563
- Ligands: FE2.10, FE.12
9 PLIP interactions:4 interactions with chain B, 1 Ligand-Ligand interactions, 4 Ligand-Water interactions- Metal complexes: B:C.333, B:C.446, B:C.476, B:C.526, VV2.9, H2O.16, H2O.28, H2O.28, H2O.28
- 2 x FE2: FE (II) ION(Non-covalent)
FE2.4: 7 residues within 4Å:- Chain A: H.261, C.295, C.333, C.526, K.563
- Ligands: VV2.3, FE.6
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.261, A:C.295, H2O.1, H2O.13
FE2.10: 7 residues within 4Å:- Chain B: H.261, C.295, C.333, C.526, K.563
- Ligands: VV2.9, FE.12
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.261, B:C.295, H2O.16, H2O.28
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.5: 10 residues within 4Å:- Chain A: P.37, Q.38, C.39, F.41
- Chain B: C.39, F.41, R.57
- Ligands: FES.2, FES.8, PEG.11
No protein-ligand interaction detected (PLIP)PEG.11: 10 residues within 4Å:- Chain A: C.39, F.41, R.57
- Chain B: P.37, Q.38, C.39, F.41
- Ligands: FES.2, PEG.5, FES.8
No protein-ligand interaction detected (PLIP)- 2 x FE: FE (III) ION(Non-covalent)
FE.6: 8 residues within 4Å:- Chain A: H.261, C.294, C.295, S.312, C.333, C.476
- Ligands: VV2.3, FE2.4
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:C.476, H2O.13
FE.12: 8 residues within 4Å:- Chain B: H.261, C.294, C.295, S.312, C.333, C.476
- Ligands: VV2.9, FE2.10
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:C.476, H2O.28
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Basak, Y. et al., Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase. Angew.Chem.Int.Ed.Engl. (2023)
- Release Date
- 2023-12-06
- Peptides
- Carbon monoxide dehydrogenase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
X
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x VV2: Fe-S cluster(Non-covalent)
- 2 x FE2: FE (II) ION(Non-covalent)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x FE: FE (III) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Basak, Y. et al., Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase. Angew.Chem.Int.Ed.Engl. (2023)
- Release Date
- 2023-12-06
- Peptides
- Carbon monoxide dehydrogenase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
X