SMTL ID : 8oo6.1

Pol I bound to extended and displaced DNA section - closed conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x DA- DC- DG- DA- DC- DG- DT- DT- DG: Displaced primer(Non-covalent)

DA-DC-DG-DA-DC-DG-DT-DT-DG.1: 14 residues within 4Å: Chain A: R.457, K.458, Q.461, N.508, G.509 Chain B: C.1, A.2, A.3, C.4, G.5, T.6, C.7, G.8, T.9 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.447 Hydrogen bonds: A:S.445, A:S.445, A:G.448, A:R.451, A:R.517 Salt bridges: A:R.517 pi-Stacking: A:F.447

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: N.96, K.98 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Botto, M.M. et al., A four-point molecular handover during Okazaki maturation. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-08-09

Peptides

DNA polymerase I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase I

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