SMTL ID : 8otu.2 (1 other biounit)

The crystal structure of PET44, a PETase enzyme from Alkalilimnicola ehrlichii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: S.70, L.71, V.72, F.75, G.76, N.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.70 Water bridges: A:F.75 NA.2: 5 residues within 4Å: Chain A: E.291, D.293, R.294, I.296, S.297 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.291

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: G.42, Y.43, A.44, D.276, Q.277, D.278 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.43, A:A.44, A:D.276 Water bridges: A:R.45 EDO.4: 2 residues within 4Å: Chain A: T.198, S.199 No protein-ligand interaction detected (PLIP) EDO.5: 6 residues within 4Å: Chain A: E.140, L.143, E.144, L.166, L.181, G.186 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.144, A:E.144 Water bridges: A:E.140, A:E.140 EDO.6: 6 residues within 4Å: Chain A: E.51, K.265, Y.266, F.284, P.288, H.290 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.265, A:H.290 Water bridges: A:Y.266, A:Y.266 EDO.7: 7 residues within 4Å: Chain A: N.164, R.165, Q.188, H.274, L.275, D.276, Q.277 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.274, A:L.275, A:Q.277 Water bridges: A:Y.43 EDO.8: 6 residues within 4Å: Chain A: P.288, N.289, H.290, E.291, R.292, H.299 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.289, A:H.290, A:E.291, A:E.291, A:H.299 EDO.9: 5 residues within 4Å: Chain A: Y.231, N.232, I.234, S.236, K.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.240 Water bridges: A:Y.231 EDO.10: 5 residues within 4Å: Chain A: A.44, R.45, G.46, E.87, R.280 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.46, A:E.87, A:R.280, A:R.280 EDO.11: 5 residues within 4Å: Chain A: Y.99, S.172, M.173, W.196, I.220 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.172, A:W.196, A:I.220

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 5 residues within 4Å: Chain A: D.218, S.219, I.220, N.249, H.250 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Costanzi, E. et al., The crystal structure of PET44, a PETase enzyme from Alkalilimnicola ehrlichii. To Be Published

Release Date

2024-11-06

Peptides

Dienelactone hydrolase domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dienelactone hydrolase domain-containing protein

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