SMTL ID : 8ouc.1

Escherichia coli DPS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

homo-12-mer

Ligands

7 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 6 residues within 4Å: Chain A: D.146, R.153 Chain E: D.146, R.153 Chain I: D.146, R.153 4 PLIP interactions: 1 interactions with chain E, 2 interactions with chain A, 1 interactions with chain I Hydrogen bonds: E:R.153, A:D.146, A:R.153, I:R.153 TRS.2: 6 residues within 4Å: Chain B: D.146, R.153 Chain H: D.146, R.153 Chain K: D.146, R.153 4 PLIP interactions: 1 interactions with chain K, 2 interactions with chain B, 1 interactions with chain H Hydrogen bonds: K:R.153, B:D.146, B:R.153, H:R.153 TRS.3: 6 residues within 4Å: Chain C: D.146, R.153 Chain F: D.146, R.153 Chain L: D.146, R.153 4 PLIP interactions: 2 interactions with chain F, 1 interactions with chain L, 1 interactions with chain C Hydrogen bonds: F:D.146, F:R.153, L:R.153, C:R.153 TRS.4: 6 residues within 4Å: Chain D: A.57, E.167 Chain F: A.57, E.167 Chain I: A.57, E.167 6 PLIP interactions: 2 interactions with chain I, 2 interactions with chain D, 2 interactions with chain F Water bridges: I:E.167, I:E.167, D:E.167, D:E.167, F:E.167, F:E.167 TRS.5: 6 residues within 4Å: Chain B: A.57, E.167 Chain E: A.57, E.167 Chain L: A.57, E.167 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain E, 2 interactions with chain L Water bridges: B:E.167, E:E.167, L:E.167, L:E.167 TRS.6: 6 residues within 4Å: Chain C: A.57, E.167 Chain G: A.57, E.167 Chain K: A.57, E.167 4 PLIP interactions: 1 interactions with chain K, 2 interactions with chain G, 1 interactions with chain C Water bridges: K:E.167, G:E.167, G:E.167, C:E.167 TRS.7: 6 residues within 4Å: Chain D: D.146, R.153 Chain G: D.146, R.153 Chain J: D.146, R.153 4 PLIP interactions: 1 interactions with chain D, 2 interactions with chain J, 1 interactions with chain G Hydrogen bonds: D:R.153, J:D.146, J:R.153, G:R.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kovalenko, V.V. et al., Escherichia coli DPS. To be published

Release Date

2023-05-03

Peptides

DNA protection during starvation protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
CCC

D
DDD

E
EEE

F
FFF

G
GGG

H
HHH

I
III

J
JJJ

K
KKK

L
LLL

DNA protection during starvation protein

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