SMTL ID : 8ouu.1 (1 other biounit)

Crystal structure of D1228V c-MET bound by compound 29

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: I.47, A.71, P.121, Y.122, M.123, M.174, F.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.123

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: V.164, T.224, T.225, K.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.225, A:T.225, A:K.226 Water bridges: A:T.224

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: A.159, T.225, S.292, F.293, S.294 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.293, A:S.294

1 x W49: 5-(3-ethynyl-5-fluoranyl-1H-indazol-7-yl)-1-[(1S)-1-phenylethyl]pyrimidine-2,4-dione(Non-covalent)

W49.4: 20 residues within 4Å: Chain A: K.73, L.75, F.87, E.90, G.91, M.94, F.97, V.102, L.103, L.105, I.108, V.118, L.120, F.163, H.165, V.183, A.184, D.185, A.189, R.190 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.87, A:E.90, A:F.97, A:V.102, A:L.105, A:L.105, A:V.118, A:V.118, A:L.120, A:F.163, A:F.163, A:D.185 Hydrogen bonds: A:K.73, A:D.185, A:D.185, A:R.190 Water bridges: A:K.73, A:D.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michaelides, I.N. et al., Discovery and Optimization of the First ATP Competitive Type-III c-MET Inhibitor. J.Med.Chem. (2023)

Release Date

2023-07-05

Peptides

Hepatocyte growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hepatocyte growth factor receptor

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