SMTL ID : 8ovd.1

Respiratory supercomplex (III2-IV2) from Mycobacterium smegmatis

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

4 x HEC: HEME C(Covalent)

HEC.1: 23 residues within 4Å: Chain A: S.70, C.71, C.74, H.75, R.85, G.86, P.87, L.89, T.92, A.96, V.97, Q.100, V.101, M.106, P.107, A.108, A.115, F.122, Q.211 Chain K: T.32, Q.35, P.37, A.38 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain K, Hydrophobic interactions: A:P.87, A:L.89, A:L.89, A:T.92, A:A.96, A:Q.100, A:V.101, A:M.106, A:F.122 Hydrogen bonds: A:Q.100, K:A.38 Metal complexes: A:H.75 HEC.2: 25 residues within 4Å: Chain A: F.99, R.105, Q.114, A.115, N.171, C.172, C.175, H.176, L.185, Y.190, A.191, P.192, L.194, A.197, I.202, A.205, M.206, P.210, Q.211, N.212, M.213, P.214, F.216, I.229 Chain B: Y.343 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:F.99, A:L.185, A:A.191, A:L.194, A:I.202, A:A.205, A:P.210, A:Q.211, A:M.213, A:P.214, A:F.216, A:I.229 Hydrogen bonds: A:Q.100, A:Q.211 Water bridges: A:R.105, A:Q.114 Salt bridges: A:R.105, A:R.105 Metal complexes: A:H.176 HEC.44: 22 residues within 4Å: Chain M: S.70, C.71, C.74, H.75, R.85, P.87, L.89, T.92, A.96, V.97, Q.100, V.101, M.106, P.107, A.108, A.115, F.122, Q.211 Chain W: T.32, Q.35, P.37, A.38 13 PLIP interactions: 12 interactions with chain M, 1 interactions with chain W, Hydrophobic interactions: M:P.87, M:L.89, M:L.89, M:T.92, M:A.96, M:Q.100, M:V.101, M:M.106, M:F.122 Hydrogen bonds: M:Q.100, W:A.38 Water bridges: M:Q.211 Metal complexes: M:H.75 HEC.45: 25 residues within 4Å: Chain M: F.99, R.105, Q.114, A.115, N.171, C.172, C.175, H.176, L.185, Y.190, A.191, P.192, L.194, A.197, I.202, A.205, M.206, P.210, Q.211, N.212, M.213, P.214, F.216, I.229 Chain N: Y.343 19 PLIP interactions: 19 interactions with chain M, Hydrophobic interactions: M:F.99, M:L.185, M:A.191, M:L.194, M:I.202, M:A.205, M:P.210, M:Q.211, M:P.214, M:F.216, M:I.229 Hydrogen bonds: M:Q.100, M:Q.211 Water bridges: M:R.105, M:Q.114, M:A.197 Salt bridges: M:R.105, M:R.105 Metal complexes: M:H.176

12 x MQ9: MENAQUINONE-9(Non-covalent)

MQ9.3: 23 residues within 4Å: Chain A: A.253, G.256, M.257, W.260, I.261 Chain C: M.121, V.122, A.125, F.128, F.129, L.148, F.303, W.307, V.340, L.343, Y.347, G.377, A.380, I.381, Y.384, L.385, T.388 Ligands: CDL.12 28 PLIP interactions: 22 interactions with chain C, 6 interactions with chain A Hydrophobic interactions: C:M.121, C:V.122, C:A.125, C:F.128, C:F.128, C:F.129, C:L.148, C:F.303, C:W.307, C:W.307, C:V.340, C:V.340, C:L.343, C:Y.347, C:I.381, C:I.381, C:Y.384, C:Y.384, C:Y.384, C:Y.384, C:L.385, C:T.388, A:W.260, A:W.260, A:W.260, A:W.260, A:I.261 pi-Stacking: A:W.260 MQ9.9: 18 residues within 4Å: Chain B: G.188, L.191, G.192, G.195, T.198, L.199, F.202 Chain O: E.44, L.47, I.51, L.55, L.227, W.231, F.257 Ligands: 7PH.8, CDL.56, MQ9.60, HEM.61 10 PLIP interactions: 6 interactions with chain O, 4 interactions with chain B Hydrophobic interactions: O:E.44, O:L.47, O:I.51, O:L.55, O:L.227, O:F.257, B:L.191, B:L.199, B:F.202, B:F.202 MQ9.14: 20 residues within 4Å: Chain B: F.123, I.127, I.130, A.134 Chain C: I.52, L.55, T.56, F.104, V.105, A.258, V.259, G.262, A.263, F.265, A.266, T.269 Chain N: A.201, F.202 Ligands: MQ9.15, 7PH.53 16 PLIP interactions: 6 interactions with chain B, 9 interactions with chain C, 1 interactions with chain N Hydrophobic interactions: B:F.123, B:F.123, B:F.123, B:I.127, B:I.130, B:A.134, C:I.52, C:L.55, C:T.56, C:F.104, C:V.105, C:V.259, C:F.265, C:F.265, C:T.269, N:A.201 MQ9.15: 17 residues within 4Å: Chain C: F.34, P.35, F.40, E.44, L.220, V.230, W.231, H.235, F.257 Chain O: G.217, I.218, L.220, A.221 Ligands: MQ9.14, HEM.16, MQ9.49, CDL.56 12 PLIP interactions: 11 interactions with chain C, 1 interactions with chain O Hydrophobic interactions: C:F.34, C:F.34, C:F.40, C:L.220, C:V.230, C:W.231, C:H.235, C:F.257, C:F.257, O:A.221 Hydrogen bonds: C:E.44 Water bridges: C:H.235 MQ9.17: 19 residues within 4Å: Chain C: A.139, V.142, L.146, F.153, A.174, L.175, I.178, T.179, M.305, T.308, A.334, M.337, G.338, A.342, I.345, A.346, F.349 Chain O: R.19 Ligands: CDL.56 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:A.139, C:V.142, C:L.146, C:A.174, C:I.178, C:I.178, C:I.345, C:A.346, C:F.349, C:F.349, C:F.349, C:F.349 MQ9.24: 30 residues within 4Å: Chain A: Y.245, L.247, G.248, F.250, P.254, M.257 Chain C: F.389, M.392, N.393, I.395, K.399, F.400, I.402, T.407, I.410, G.411 Chain F: L.97, S.100, T.101, V.104, W.112 Chain G: F.131, L.134, I.135, A.138, I.141, L.170 Ligands: WUO.4, CDL.13, 9YF.39 22 PLIP interactions: 8 interactions with chain C, 6 interactions with chain G, 1 interactions with chain A, 7 interactions with chain F Hydrophobic interactions: C:F.389, C:N.393, C:I.395, C:K.399, C:F.400, C:F.400, C:I.402, C:I.410, G:F.131, G:L.134, G:I.135, G:A.138, G:I.141, G:L.170, A:L.247, F:L.97, F:T.101, F:V.104, F:W.112, F:W.112, F:W.112 pi-Stacking: F:W.112 MQ9.46: 23 residues within 4Å: Chain M: A.253, G.256, M.257, W.260, I.261 Chain O: M.121, V.122, A.125, F.128, F.129, L.148, F.303, W.307, V.340, L.343, Y.347, G.377, A.380, I.381, Y.384, L.385, T.388 Ligands: CDL.57 28 PLIP interactions: 22 interactions with chain O, 6 interactions with chain M Hydrophobic interactions: O:M.121, O:V.122, O:A.125, O:F.128, O:F.128, O:F.129, O:L.148, O:F.303, O:W.307, O:W.307, O:V.340, O:V.340, O:L.343, O:Y.347, O:I.381, O:I.381, O:Y.384, O:Y.384, O:Y.384, O:Y.384, O:L.385, O:T.388, M:W.260, M:W.260, M:W.260, M:W.260, M:I.261 pi-Stacking: M:W.260 MQ9.49: 19 residues within 4Å: Chain C: F.34, E.44, L.47, I.51, L.55, L.227, W.231, F.257 Chain N: G.188, L.191, G.192, G.195, T.198, L.199, F.202 Ligands: CDL.11, MQ9.15, HEM.16, 7PH.53 10 PLIP interactions: 4 interactions with chain N, 6 interactions with chain C Hydrophobic interactions: N:L.191, N:L.199, N:F.202, N:F.202, C:F.34, C:L.47, C:I.51, C:L.55, C:L.227, C:F.257 MQ9.59: 20 residues within 4Å: Chain B: A.201, F.202 Chain N: F.123, I.127, I.130, A.134 Chain O: I.52, L.55, T.56, F.104, V.105, A.258, V.259, G.262, A.263, F.265, A.266, T.269 Ligands: 7PH.8, MQ9.60 17 PLIP interactions: 9 interactions with chain O, 6 interactions with chain N, 2 interactions with chain B Hydrophobic interactions: O:I.52, O:L.55, O:T.56, O:F.104, O:V.105, O:V.259, O:F.265, O:F.265, O:T.269, N:F.123, N:F.123, N:F.123, N:I.127, N:I.130, N:A.134, B:A.201, B:F.202 MQ9.60: 17 residues within 4Å: Chain C: G.217, I.218, L.220, A.221 Chain O: F.34, P.35, F.40, E.44, L.220, V.230, W.231, H.235, F.257 Ligands: MQ9.9, CDL.11, MQ9.59, HEM.61 13 PLIP interactions: 11 interactions with chain O, 2 interactions with chain C Hydrophobic interactions: O:F.34, O:F.34, O:F.40, O:L.220, O:V.230, O:W.231, O:H.235, O:F.257, O:F.257, C:I.218, C:A.221 Hydrogen bonds: O:E.44 Water bridges: O:H.235 MQ9.62: 19 residues within 4Å: Chain C: R.19 Chain O: A.139, V.142, L.146, F.153, A.174, L.175, I.178, T.179, M.305, T.308, A.334, M.337, G.338, A.342, I.345, A.346, F.349 Ligands: CDL.11 11 PLIP interactions: 11 interactions with chain O Hydrophobic interactions: O:A.139, O:V.142, O:L.146, O:A.174, O:I.178, O:I.345, O:A.346, O:F.349, O:F.349, O:F.349, O:F.349 MQ9.69: 27 residues within 4Å: Chain M: Y.245, L.247, G.248, F.250, P.254, M.257 Chain O: F.389, M.392, N.393, I.395, F.400, T.407, I.410, G.411 Chain R: S.100, T.101, V.104, W.112 Chain S: F.131, L.134, I.135, A.138, I.141, L.170 Ligands: WUO.47, 9YF.82, 9XX.84 18 PLIP interactions: 6 interactions with chain S, 6 interactions with chain O, 5 interactions with chain R, 1 interactions with chain M Hydrophobic interactions: S:F.131, S:L.134, S:I.135, S:A.138, S:I.141, S:L.170, O:F.389, O:N.393, O:I.395, O:F.400, O:F.400, O:I.410, R:V.104, R:W.112, R:W.112, R:W.112, M:L.247 pi-Stacking: R:W.112

4 x WUO: acyl-phosphatidyl-myo-inositol dimannoside (AcPIM2)(Non-covalent)

WUO.4: 27 residues within 4Å: Chain A: K.181, D.193, G.195, A.237, P.240, S.241, G.244, Y.245, G.246, G.248, M.257, I.261, I.262 Chain B: P.117 Chain C: M.275, L.278, L.279 Chain F: T.101, W.112, L.113, A.115, A.116, V.118, F.120 Ligands: CDL.13, MQ9.24, 9YF.39 27 PLIP interactions: 15 interactions with chain A, 5 interactions with chain C, 6 interactions with chain F, 1 interactions with chain B Hydrophobic interactions: A:Y.245, A:Y.245, A:I.261, A:I.261, A:I.262, C:L.278, C:L.278, C:L.278, C:L.279, F:W.112, F:L.113, F:A.116, F:V.118, F:F.120, F:F.120, B:P.117 Hydrogen bonds: A:D.193, A:A.237, A:S.241, A:S.241, A:Y.245, A:G.246, A:G.248, A:G.248 Water bridges: A:Y.245, C:K.399 Salt bridges: A:K.181 WUO.20: 20 residues within 4Å: Chain D: V.68, G.69, H.70, V.71, W.74, F.75, I.77, G.78, F.79, A.81, V.82 Chain G: F.73, Q.78 Chain H: L.335 Chain K: G.27, Q.28, I.29 Ligands: CDL.31, 9YF.39, 9XX.40 20 PLIP interactions: 15 interactions with chain D, 2 interactions with chain K, 3 interactions with chain G Hydrophobic interactions: D:V.71, D:W.74, D:W.74, D:W.74, D:W.74, D:F.75, D:F.75, D:I.77, D:F.79, D:F.79, D:A.81, D:V.82, G:F.73 Hydrogen bonds: D:H.70, D:V.71, K:Q.28, K:I.29, G:F.73, G:Q.78 Salt bridges: D:H.70 WUO.47: 23 residues within 4Å: Chain M: K.181, D.193, G.195, A.237, P.240, S.241, G.244, Y.245, G.246, M.257, I.261, I.262 Chain N: P.117 Chain O: M.275, L.278, L.279 Chain R: P.111, W.112, A.116, A.119, F.120 Ligands: CDL.48, MQ9.69 25 PLIP interactions: 15 interactions with chain M, 4 interactions with chain R, 5 interactions with chain O, 1 interactions with chain N Hydrophobic interactions: M:Y.245, M:Y.245, M:Y.245, M:Y.245, M:I.261, M:I.262, M:I.262, R:W.112, R:A.116, R:A.119, R:F.120, O:L.278, O:L.278, O:L.279, O:L.279, N:P.117 Hydrogen bonds: M:D.193, M:S.241, M:Y.245, M:G.246, M:G.248 Water bridges: M:Y.245, M:G.248, O:K.399 Salt bridges: M:K.181 WUO.65: 19 residues within 4Å: Chain P: V.68, G.69, H.70, V.71, W.74, F.75, I.77, G.78, F.79, V.82 Chain S: F.61, F.73 Chain T: L.335 Chain W: G.27, Q.28, I.29 Ligands: CDL.63, 9YF.82, 9XX.84 21 PLIP interactions: 2 interactions with chain W, 4 interactions with chain S, 15 interactions with chain P Hydrogen bonds: W:Q.28, W:I.29, S:F.73, P:H.70, P:H.70, P:V.71 Hydrophobic interactions: S:F.73, S:F.73, S:F.73, P:V.71, P:W.74, P:W.74, P:W.74, P:W.74, P:F.75, P:F.75, P:I.77, P:F.79, P:F.79, P:V.82 Salt bridges: P:H.70

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.5: 8 residues within 4Å: Chain B: C.333, H.335, L.336, G.337, C.338, C.352, H.355, S.357 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.333, B:H.335, B:C.352, B:H.355 FES.50: 8 residues within 4Å: Chain N: C.333, H.335, L.336, G.337, C.338, C.352, H.355, S.357 4 PLIP interactions: 4 interactions with chain N, Metal complexes: N:C.333, N:H.335, N:C.352, N:H.355

2 x IZL: [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{R})-10-methyldodecanoate(Non-covalent)

IZL.6: 13 residues within 4Å: Chain B: W.211, K.222, A.223, W.226, W.404, E.405, R.406, K.407 Chain C: V.184, I.185, W.188, G.324, H.325 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain C Hydrogen bonds: B:W.211, B:K.222, B:K.222, B:E.405, B:E.405, B:E.405, B:K.407, C:H.325 Water bridges: B:N.209 Hydrophobic interactions: C:V.184, C:W.188 Salt bridges: C:H.325 IZL.51: 15 residues within 4Å: Chain N: W.211, K.222, W.226, D.394, F.395, V.396, W.404, E.405, R.406, K.407 Chain O: V.184, I.185, W.188, G.324, H.325 10 PLIP interactions: 2 interactions with chain O, 8 interactions with chain N Hydrophobic interactions: O:V.184 Salt bridges: O:H.325, N:K.222 Hydrogen bonds: N:W.211, N:K.222, N:E.405, N:E.405, N:K.407 Water bridges: N:N.209, N:N.209

4 x 9YF: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate(Non-covalent)

9YF.7: 16 residues within 4Å: Chain B: V.200, G.204, G.205, I.207, K.208, N.209, K.212 Chain C: I.185, W.188, M.189, A.192 Chain N: L.95, F.96, W.99 Chain O: E.98, R.100 15 PLIP interactions: 6 interactions with chain B, 2 interactions with chain O, 3 interactions with chain N, 4 interactions with chain C Hydrophobic interactions: B:V.200, B:V.200, N:L.95, N:F.96, C:I.185, C:W.188, C:W.188, C:A.192 Hydrogen bonds: B:K.208, B:K.208, B:N.209, O:R.100, N:W.99 Salt bridges: B:K.212, O:R.100 9YF.39: 22 residues within 4Å: Chain A: S.187 Chain C: S.403, N.405, A.406, W.409, I.410, I.413, G.414 Chain D: V.71, E.72, F.75, F.79 Chain G: I.141 Chain K: C.24, S.25, I.29, Q.31 Ligands: WUO.4, CDL.13, WUO.20, MQ9.24, 9XX.40 16 PLIP interactions: 5 interactions with chain C, 3 interactions with chain K, 6 interactions with chain D, 1 interactions with chain G, 1 interactions with chain A Hydrophobic interactions: C:W.409, C:I.410, D:E.72, D:F.75, D:F.75, D:F.79, D:F.79, G:I.141 Hydrogen bonds: C:S.403, C:N.405, K:I.29, K:Q.31, D:E.72, A:S.187 Water bridges: C:S.403, K:S.25 9YF.52: 16 residues within 4Å: Chain B: L.95, F.96, W.99 Chain C: E.98, R.100 Chain N: V.200, G.204, G.205, I.207, K.208, N.209, K.212 Chain O: I.185, W.188, M.189, A.192 17 PLIP interactions: 3 interactions with chain B, 5 interactions with chain O, 7 interactions with chain N, 2 interactions with chain C Hydrophobic interactions: B:L.95, B:F.96, O:I.185, O:I.185, O:W.188, O:W.188, O:A.192, N:V.200, N:V.200, N:I.207 Hydrogen bonds: B:W.99, N:K.208, N:K.208, N:N.209, C:R.100 Salt bridges: N:K.212, C:R.100 9YF.82: 19 residues within 4Å: Chain M: S.187 Chain O: S.403, A.406, W.409, I.410, G.414 Chain P: V.71, E.72, F.75, F.79 Chain S: I.141 Chain W: C.24, S.25, I.29, Q.31 Ligands: CDL.58, WUO.65, MQ9.69, 9XX.84 17 PLIP interactions: 1 interactions with chain S, 3 interactions with chain W, 5 interactions with chain O, 7 interactions with chain P, 1 interactions with chain M Hydrophobic interactions: S:I.141, O:W.409, O:I.410, P:E.72, P:F.75, P:F.75, P:F.75, P:F.79, P:F.79 Hydrogen bonds: W:I.29, W:Q.31, O:S.403, P:E.72, M:S.187 Water bridges: W:S.25, O:S.403, O:N.405

5 x 7PH: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate(Non-covalent)

7PH.8: 12 residues within 4Å: Chain B: L.168, T.169, L.172, S.175, L.177, L.187 Chain O: A.6, M.254, P.255 Ligands: MQ9.9, 7PH.54, MQ9.59 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain O Hydrophobic interactions: B:L.177, B:L.187, O:A.6, O:P.255 Salt bridges: B:K.178 7PH.18: 11 residues within 4Å: Chain C: A.9, A.10, G.13, I.16, D.17, S.23 Chain N: R.161, A.165, L.168, T.169 Ligands: 7PH.53 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain N Hydrophobic interactions: C:I.16, C:D.17, N:A.165, N:L.168 Hydrogen bonds: N:R.161 Salt bridges: N:R.161 7PH.21: 13 residues within 4Å: Chain C: F.502 Chain E: F.107, V.156, V.159, L.162, A.163, K.166, M.167 Chain F: I.122, C.126, F.130, W.134 Ligands: CDL.25 10 PLIP interactions: 2 interactions with chain F, 1 interactions with chain C, 7 interactions with chain E Hydrophobic interactions: F:I.122, C:F.502, E:F.107, E:F.107, E:V.156, E:L.162, E:L.162, E:A.163 Salt bridges: F:K.138, E:K.166 7PH.53: 13 residues within 4Å: Chain C: F.5, A.6, M.254, P.255 Chain N: L.168, T.169, L.172, S.175, L.177, L.187 Ligands: MQ9.14, 7PH.18, MQ9.49 5 PLIP interactions: 3 interactions with chain N, 2 interactions with chain C Hydrophobic interactions: N:L.177, N:L.187, C:A.6, C:P.255 Salt bridges: N:K.178 7PH.54: 12 residues within 4Å: Chain B: R.161, A.165, L.168, T.169 Chain O: A.9, A.10, Q.12, G.13, I.16, D.17, S.23 Ligands: 7PH.8 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain O Hydrophobic interactions: B:A.165, B:L.168, O:Q.12, O:I.16, O:D.17 Hydrogen bonds: B:R.161 Salt bridges: B:R.161

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.10: 25 residues within 4Å: Chain C: F.50, L.53, L.54, G.57, V.58, L.60, T.61, F.64, R.106, H.109, H.110, A.113, F.116, E.154, G.155, G.158, Y.159, L.161, P.162, Y.208, H.211, I.212, P.216, N.282 Chain O: L.213 24 PLIP interactions: 23 interactions with chain C, 1 interactions with chain O, Hydrophobic interactions: C:F.50, C:L.53, C:L.53, C:L.54, C:V.58, C:L.60, C:T.61, C:F.64, C:F.116, C:E.154, C:Y.159, C:L.161, C:Y.208, C:I.212, C:I.212, C:P.216, O:L.213 Hydrogen bonds: C:N.282 Salt bridges: C:R.106, C:R.106, C:H.110 pi-Stacking: C:H.211 Metal complexes: C:H.109, C:H.211 HEM.16: 25 residues within 4Å: Chain C: F.40, G.43, E.44, A.46, L.47, F.116, I.120, H.123, L.124, R.126, I.127, A.132, R.137, N.140, W.141, G.144, S.145, L.147, H.226, L.227, V.230, H.235, T.236 Ligands: MQ9.15, MQ9.49 26 PLIP interactions: 26 interactions with chain C, Hydrophobic interactions: C:A.46, C:F.116, C:I.120, C:I.120, C:I.120, C:L.124, C:I.127, C:I.127, C:I.127, C:A.132, C:W.141, C:L.147, C:L.227, C:V.230 Hydrogen bonds: C:G.43, C:T.236 Water bridges: C:R.126, C:R.137 Salt bridges: C:H.123, C:R.126, C:R.126, C:R.137, C:H.235, C:H.235 Metal complexes: C:H.123, C:H.226 HEM.55: 22 residues within 4Å: Chain C: L.213 Chain O: L.53, L.54, G.57, V.58, L.60, T.61, R.106, H.109, H.110, A.113, F.116, E.154, G.155, G.158, Y.159, L.161, P.162, Y.208, H.211, I.212, N.282 22 PLIP interactions: 21 interactions with chain O, 1 interactions with chain C, Hydrophobic interactions: O:L.53, O:L.53, O:L.54, O:L.60, O:L.60, O:T.61, O:H.110, O:F.116, O:E.154, O:Y.159, O:L.161, O:Y.208, O:I.212, O:I.212, C:L.213 Hydrogen bonds: O:N.282 Salt bridges: O:R.106, O:R.106, O:H.110 pi-Stacking: O:H.211 Metal complexes: O:H.109, O:H.211 HEM.61: 25 residues within 4Å: Chain O: F.40, G.43, E.44, A.46, L.47, F.116, I.120, H.123, L.124, R.126, I.127, A.132, R.137, N.140, W.141, G.144, S.145, L.147, H.226, L.227, V.230, H.235, T.236 Ligands: MQ9.9, MQ9.60 24 PLIP interactions: 24 interactions with chain O, Hydrophobic interactions: O:A.46, O:F.116, O:I.120, O:I.120, O:L.124, O:I.127, O:I.127, O:I.127, O:A.132, O:W.141, O:L.147, O:L.227, O:V.230 Hydrogen bonds: O:G.43, O:T.236 Water bridges: O:R.126 Salt bridges: O:H.123, O:R.126, O:R.126, O:R.137, O:H.235, O:H.235 Metal complexes: O:H.123, O:H.226

15 x CDL: CARDIOLIPIN(Non-covalent)

CDL.11: 22 residues within 4Å: Chain C: Y.20, P.22, A.25, R.28, Q.29, L.47, L.220, A.221, G.224, A.225, L.227, A.228, L.229, W.231, F.232 Chain O: Y.20, H.21, R.28 Ligands: MQ9.49, CDL.56, MQ9.60, MQ9.62 15 PLIP interactions: 6 interactions with chain O, 9 interactions with chain C Hydrogen bonds: O:R.28, C:Q.29 Water bridges: O:H.21, O:H.21, O:A.25, O:R.28 Salt bridges: O:H.21, C:R.28 Hydrophobic interactions: C:Y.20, C:P.22, C:L.47, C:L.220, C:L.227, C:L.229, C:W.231 CDL.12: 26 residues within 4Å: Chain A: I.268, M.272, R.277, A.278 Chain C: H.37, W.38, A.125, R.126, F.129, R.366, P.367, R.368, T.374, S.378, I.381, V.422, A.426, W.429, A.430, L.433, P.483 Ligands: MQ9.3, CDL.13, CDL.25, CDL.31, 9XX.40 19 PLIP interactions: 16 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:A.125, C:F.129, C:F.129, C:F.129, C:I.381, C:V.422, C:A.426, C:W.429, C:W.429, C:A.430, A:I.268, A:I.268 Hydrogen bonds: C:R.366, C:R.366, C:R.368, A:A.278 Salt bridges: C:H.37, C:R.366, C:R.368 CDL.13: 22 residues within 4Å: Chain C: R.368, W.429, L.433, L.484, K.486, R.487, K.490 Chain F: W.90, W.91, I.93, L.94, L.97, S.98, F.120, S.124 Chain G: Y.29, I.32 Ligands: WUO.4, CDL.12, MQ9.24, CDL.25, 9YF.39 19 PLIP interactions: 10 interactions with chain C, 8 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: C:W.429, F:W.90, F:W.90, F:W.91, F:I.93, F:L.94, F:L.97, F:F.120, F:F.120, G:I.32 Hydrogen bonds: C:L.484, C:L.484, C:K.486 Water bridges: C:R.366, C:R.368, C:K.486 Salt bridges: C:R.368, C:K.486, C:R.487 CDL.19: 19 residues within 4Å: Chain C: M.379, A.420, Y.423, F.424, R.428 Chain D: M.48, G.51, G.52, L.86, V.87, R.89, N.90, R.94, I.99 Chain G: M.21, V.46, W.493, F.496 Ligands: CDL.31 17 PLIP interactions: 5 interactions with chain G, 6 interactions with chain D, 6 interactions with chain C Hydrophobic interactions: G:V.46, G:W.493, G:F.496, G:F.496, G:F.496, D:V.87, C:Y.423, C:Y.423, C:Y.423, C:F.424 Hydrogen bonds: D:N.90, C:R.428 Salt bridges: D:H.49, D:R.89, D:R.89, D:R.94, C:R.428 CDL.25: 24 residues within 4Å: Chain A: I.261, I.262, V.265, A.266, I.268, G.269, V.270, M.272, W.273, R.277 Chain C: R.487, K.490 Chain F: W.91, F.120, I.122, T.123, C.126, G.127, W.134, G.135, E.137 Ligands: CDL.12, CDL.13, 7PH.21 14 PLIP interactions: 5 interactions with chain A, 5 interactions with chain F, 1 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: A:V.265, A:I.268, A:W.273, A:W.273, F:F.120, F:I.122, F:T.123, F:W.134 Hydrogen bonds: A:R.277, F:G.135, C:K.490 Salt bridges: B:K.139, C:R.487, C:K.490 CDL.27: 19 residues within 4Å: Chain E: V.25, T.29, W.32, G.153, L.161, R.164, A.177, V.180, V.181, Y.184 Chain F: I.95, V.125, L.128, V.129 Chain G: F.118, P.119, R.120, L.121, L.124 19 PLIP interactions: 6 interactions with chain G, 4 interactions with chain F, 9 interactions with chain E Hydrophobic interactions: G:F.118, G:L.124, F:I.95, F:V.125, F:V.129, F:V.129, E:W.32, E:W.32, E:V.180, E:Y.184, E:Y.184 Hydrogen bonds: G:F.118, G:R.120, G:L.121 Salt bridges: G:R.120, E:R.164, E:R.164 Water bridges: E:R.164, E:R.164 CDL.31: 26 residues within 4Å: Chain C: F.424, V.425, R.428 Chain G: M.21, G.22, P.23, K.24, G.25, N.26, L.27, I.28, L.31, I.42, M.43, V.46, V.47, F.49, W.127, L.130, V.495, W.499, R.500 Ligands: CDL.12, CDL.19, WUO.20, 9XX.40 17 PLIP interactions: 4 interactions with chain C, 13 interactions with chain G Hydrophobic interactions: C:F.424, C:V.425, G:L.27, G:L.31, G:I.42, G:V.46, G:V.47, G:F.49, G:L.130, G:W.499 Salt bridges: C:R.428, C:R.428 Hydrogen bonds: G:G.22, G:G.25, G:N.26, G:L.27, G:I.28 CDL.48: 22 residues within 4Å: Chain M: I.262, V.265, A.266, I.268, G.269, V.270, M.272, W.273, R.277 Chain O: R.487, K.490 Chain R: W.91, T.123, C.126, G.127, W.134, G.135, E.137 Ligands: WUO.47, CDL.57, CDL.58, CDL.66 13 PLIP interactions: 6 interactions with chain M, 5 interactions with chain R, 2 interactions with chain O Hydrophobic interactions: M:I.262, M:V.265, M:I.268, M:W.273, M:W.273, R:T.123, R:W.134 Salt bridges: M:R.277, O:R.487, O:K.490 Hydrogen bonds: R:G.135 Water bridges: R:K.138, R:K.138 CDL.56: 22 residues within 4Å: Chain C: Y.20, H.21, R.28 Chain O: Y.20, P.22, A.25, R.28, Q.29, L.47, L.220, A.221, G.224, A.225, L.227, A.228, L.229, W.231, F.232 Ligands: MQ9.9, CDL.11, MQ9.15, MQ9.17 15 PLIP interactions: 9 interactions with chain O, 6 interactions with chain C Hydrophobic interactions: O:Y.20, O:P.22, O:L.47, O:L.220, O:L.227, O:L.229, O:W.231 Hydrogen bonds: O:Q.29, C:R.28 Salt bridges: O:R.28, C:H.21 Water bridges: C:H.21, C:H.21, C:A.25, C:R.28 CDL.57: 26 residues within 4Å: Chain M: I.268, M.272, R.277, A.278 Chain O: H.37, W.38, A.125, R.126, F.129, R.366, P.367, R.368, T.374, S.378, I.381, L.385, V.422, V.425, A.426, W.429, A.430, L.433, P.483 Ligands: MQ9.46, CDL.48, CDL.58 20 PLIP interactions: 18 interactions with chain O, 2 interactions with chain M Hydrophobic interactions: O:A.125, O:F.129, O:F.129, O:F.129, O:T.374, O:I.381, O:L.385, O:V.422, O:V.425, O:W.429, O:W.429, O:W.429, M:I.268 Hydrogen bonds: O:R.366, O:R.366, O:R.368, M:A.278 Salt bridges: O:H.37, O:R.366, O:R.368 CDL.58: 22 residues within 4Å: Chain M: M.272 Chain O: R.366, R.368, W.429, L.433, P.483, L.484, K.486, R.487 Chain R: W.90, W.91, L.94, L.97, S.98, T.101, F.120, T.123 Chain S: Y.29, I.32 Ligands: CDL.48, CDL.57, 9YF.82 24 PLIP interactions: 12 interactions with chain R, 12 interactions with chain O Hydrophobic interactions: R:W.90, R:W.90, R:W.90, R:W.90, R:W.91, R:L.94, R:L.94, R:L.97, R:L.97, R:F.120, R:F.120, R:T.123, O:W.429 Hydrogen bonds: O:R.366, O:L.484, O:L.484 Water bridges: O:R.368, O:R.368, O:K.486 Salt bridges: O:R.368, O:R.368, O:K.486, O:R.487, O:R.487 CDL.63: 23 residues within 4Å: Chain O: V.417, A.420, Y.423, F.424, R.428 Chain P: M.48, G.51, G.52, L.54, S.55, A.81, I.83, A.85, L.86, V.87, R.89, N.90, R.94, I.99 Chain S: M.21, F.496 Ligands: CDL.64, WUO.65 15 PLIP interactions: 11 interactions with chain P, 4 interactions with chain O Hydrophobic interactions: P:M.48, P:L.54, P:I.83, P:A.85, P:L.86, P:L.86, P:V.87, O:V.417, O:Y.423 Hydrogen bonds: P:N.90, O:R.428 Salt bridges: P:R.89, P:R.89, P:R.94, O:R.428 CDL.64: 18 residues within 4Å: Chain P: A.81, A.85, G.88, R.89, W.91, W.92, L.93, R.96, W.98 Chain S: L.53, V.492, W.493, F.496, K.497, R.500, Y.501 Chain V: M.46 Ligands: CDL.63 18 PLIP interactions: 8 interactions with chain P, 10 interactions with chain S Hydrophobic interactions: P:R.89, P:W.91, P:W.91, P:W.92, P:W.92, S:L.53, S:F.496, S:F.496 Salt bridges: P:R.89, P:R.89, P:R.96, S:K.497, S:R.500 Hydrogen bonds: S:K.497, S:K.497, S:Y.501 Water bridges: S:R.500, S:R.500 CDL.66: 24 residues within 4Å: Chain M: W.273 Chain N: L.75, W.79, L.121, L.128, I.132, L.136, K.139, K.140 Chain O: L.274, F.502 Chain Q: F.107, V.159, L.160, L.162, A.163, K.166, M.167 Chain R: I.122, C.126, F.130, W.134, K.138 Ligands: CDL.48 28 PLIP interactions: 9 interactions with chain Q, 11 interactions with chain N, 5 interactions with chain R, 3 interactions with chain O Hydrophobic interactions: Q:F.107, Q:F.107, Q:L.160, Q:L.162, Q:A.163, Q:K.166, N:L.75, N:W.79, N:W.79, N:L.121, N:L.128, N:I.132, N:I.132, R:I.122, R:F.130, O:L.274, O:F.502, O:F.502 Salt bridges: Q:K.166, Q:K.166, Q:K.166, N:K.140, N:K.140, R:K.138 Water bridges: N:K.140, N:K.140 Hydrogen bonds: R:K.138, R:K.138 CDL.71: 22 residues within 4Å: Chain Q: V.25, G.28, W.32, L.149, G.153, L.160, L.161, R.164, A.177, V.180, V.181, Y.184 Chain R: I.95, F.99, V.121, V.125, L.128 Chain S: F.118, P.119, R.120, L.121, L.124 26 PLIP interactions: 4 interactions with chain R, 12 interactions with chain S, 10 interactions with chain Q Hydrophobic interactions: R:I.95, R:F.99, R:V.121, R:V.125, S:F.118, S:F.118, S:L.121, S:L.121, S:L.124, Q:W.32, Q:W.32, Q:L.149, Q:L.160, Q:V.180, Q:Y.184, Q:Y.184 Hydrogen bonds: S:R.120, S:L.121 Water bridges: S:F.118, S:F.118, S:R.120, S:R.120, Q:A.177 Salt bridges: S:R.120, Q:R.164, Q:R.164

10 x TRD: TRIDECANE(Non-covalent)

TRD.22: 4 residues within 4Å: Chain E: R.51, A.197, T.198, V.202 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:A.197, E:T.198, E:V.202 TRD.26: 4 residues within 4Å: Chain E: F.44, F.48 Chain F: V.34, W.36 5 PLIP interactions: 3 interactions with chain F, 2 interactions with chain E Hydrophobic interactions: F:V.34, F:W.36, F:W.36, E:F.44, E:F.48 TRD.34: 4 residues within 4Å: Chain G: H.443, T.444, V.448, I.476 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:H.443, G:V.448, G:I.476 TRD.35: 5 residues within 4Å: Chain G: L.371, L.447, H.450, W.451 Ligands: TRD.38 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:L.447, G:W.451, G:W.451, G:W.451 TRD.38: 4 residues within 4Å: Chain G: W.451 Chain H: A.30, W.65 Ligands: TRD.35 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain H Hydrophobic interactions: G:W.451, G:W.451, H:A.30, H:W.65 TRD.67: 4 residues within 4Å: Chain Q: R.51, A.197, T.198, V.202 3 PLIP interactions: 3 interactions with chain Q Hydrophobic interactions: Q:A.197, Q:T.198, Q:V.202 TRD.70: 4 residues within 4Å: Chain Q: F.44, F.48 Chain R: V.34, W.36 5 PLIP interactions: 3 interactions with chain R, 2 interactions with chain Q Hydrophobic interactions: R:V.34, R:W.36, R:W.36, Q:F.44, Q:F.48 TRD.77: 4 residues within 4Å: Chain S: H.443, T.444, V.448, I.476 3 PLIP interactions: 3 interactions with chain S Hydrophobic interactions: S:H.443, S:V.448, S:I.476 TRD.78: 5 residues within 4Å: Chain S: L.371, L.447, H.450, W.451 Ligands: TRD.81 4 PLIP interactions: 4 interactions with chain S Hydrophobic interactions: S:L.447, S:W.451, S:W.451, S:W.451 TRD.81: 4 residues within 4Å: Chain S: W.451 Chain T: A.30, W.65 Ligands: TRD.78 4 PLIP interactions: 2 interactions with chain T, 2 interactions with chain S Hydrophobic interactions: T:A.30, T:W.65, S:W.451, S:W.451

2 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.23: 7 residues within 4Å: Chain E: Y.121, T.130, I.131, P.132, Y.141, G.145 Chain G: L.240 7 PLIP interactions: 5 interactions with chain E, 2 interactions with chain G Hydrophobic interactions: E:Y.121, E:I.131, E:Y.141, G:L.240, G:L.240 Hydrogen bonds: E:T.130, E:I.131 3PE.68: 8 residues within 4Å: Chain Q: Y.121, V.125, T.130, I.131, P.132, Y.141, G.145 Chain S: L.240 6 PLIP interactions: 5 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: Q:Y.121, Q:I.131, Q:Y.141, S:L.240 Hydrogen bonds: Q:T.130, Q:I.131

4 x HEA: HEME-A(Non-covalent)

HEA.28: 33 residues within 4Å: Chain G: W.151, T.152, W.260, V.267, Y.268, H.313, H.314, T.330, I.333, A.334, T.337, G.338, F.341, F.369, L.370, G.373, G.376, V.377, L.379, A.380, D.385, T.389, V.394, H.397, F.398, V.401, L.402, T.405, R.459 Chain H: V.60, P.102, I.105, I.106 28 PLIP interactions: 25 interactions with chain G, 3 interactions with chain H, Hydrophobic interactions: G:W.260, G:V.267, G:V.267, G:T.330, G:A.334, G:T.337, G:F.341, G:F.369, G:L.370, G:V.377, G:L.379, G:F.398, G:F.398, G:V.401, G:L.402, G:L.402, H:V.60, H:I.105, H:I.106 Hydrogen bonds: G:W.151, G:Y.268 Water bridges: G:T.337, G:T.389, G:D.390, G:D.390 Salt bridges: G:R.459 pi-Cation interactions: G:H.264 Metal complexes: G:H.397 HEA.29: 30 residues within 4Å: Chain G: F.52, L.53, G.56, L.57, A.59, L.60, R.63, F.79, F.83, H.86, G.87, M.90, L.91, G.150, W.151, Y.392, I.395, F.398, H.399, L.402, I.406, F.446, Q.449, R.459, R.460, Y.461, A.481, L.484, G.485, M.488 26 PLIP interactions: 26 interactions with chain G, Hydrophobic interactions: G:F.52, G:F.52, G:L.57, G:L.60, G:M.90, G:L.91, G:L.91, G:I.395, G:F.398, G:F.398, G:L.402, G:I.406, G:A.481, G:L.484 Hydrogen bonds: G:R.63, G:W.151, G:Y.392, G:Q.449, G:R.460, G:Y.461 Water bridges: G:R.459 Salt bridges: G:R.459, G:R.460 pi-Stacking: G:H.399 Metal complexes: G:H.86, G:H.399 HEA.72: 31 residues within 4Å: Chain S: W.151, W.260, V.267, Y.268, H.313, H.314, T.330, I.333, A.334, T.337, G.338, F.341, F.369, L.370, G.373, G.376, V.377, L.379, A.380, D.385, T.389, V.394, H.397, F.398, V.401, L.402, T.405, R.459 Chain T: V.60, P.102, I.106 28 PLIP interactions: 26 interactions with chain S, 2 interactions with chain T, Hydrophobic interactions: S:W.260, S:V.267, S:V.267, S:T.330, S:A.334, S:T.337, S:F.341, S:F.369, S:L.370, S:V.377, S:L.379, S:F.398, S:F.398, S:V.401, S:V.401, S:L.402, S:L.402, T:V.60, T:I.106 Hydrogen bonds: S:W.151, S:Y.268 Water bridges: S:T.337, S:T.389, S:D.390, S:D.390 Salt bridges: S:R.459 pi-Cation interactions: S:H.264 Metal complexes: S:H.397 HEA.73: 30 residues within 4Å: Chain S: F.52, V.54, G.56, L.57, A.59, R.63, F.79, F.83, H.86, G.87, M.90, L.91, G.150, W.151, Y.392, I.395, F.398, H.399, L.402, F.403, I.406, F.446, Q.449, R.459, R.460, Y.461, A.481, L.484, M.488 Ligands: 9XX.84 26 PLIP interactions: 26 interactions with chain S, Hydrophobic interactions: S:F.52, S:F.52, S:V.54, S:M.90, S:L.91, S:L.91, S:I.395, S:F.398, S:F.398, S:L.402, S:F.403, S:I.406, S:A.481, S:L.484 Hydrogen bonds: S:R.63, S:W.151, S:Y.392, S:Q.449, S:R.460, S:Y.461 Water bridges: S:R.459 Salt bridges: S:R.459, S:R.460 pi-Stacking: S:H.399 Metal complexes: S:H.86, S:H.399

6 x CU: COPPER (II) ION(Non-covalent)

CU.30: 3 residues within 4Å: Chain G: H.264, H.313, H.314 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.264, G:H.313, G:H.314 CU.36: 5 residues within 4Å: Chain H: H.232, C.273, C.277, M.284 Ligands: CU.37 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:H.232, H:C.273, H:C.277 CU.37: 5 residues within 4Å: Chain H: C.273, E.275, C.277, H.281 Ligands: CU.36 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.273, H:E.275, H:C.277, H:H.281 CU.74: 3 residues within 4Å: Chain S: H.264, H.313, H.314 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:H.264, S:H.313, S:H.314 CU.79: 5 residues within 4Å: Chain T: C.273, E.275, C.277, H.281 Ligands: CU.80 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:C.273, T:E.275, T:C.277, T:H.281 CU.80: 5 residues within 4Å: Chain T: H.232, C.273, C.277, M.284 Ligands: CU.79 3 PLIP interactions: 3 interactions with chain T Metal complexes: T:H.232, T:C.273, T:C.277

2 x MG: MAGNESIUM ION(Non-covalent)

MG.32: 3 residues within 4Å: Chain G: D.390 Chain H: D.244, E.275 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain G Metal complexes: H:E.275, G:D.390, G:D.390 MG.75: 3 residues within 4Å: Chain S: D.390 Chain T: D.244, E.275 3 PLIP interactions: 1 interactions with chain T, 2 interactions with chain S Metal complexes: T:E.275, S:D.390, S:D.390

2 x CA: CALCIUM ION(Non-covalent)

CA.33: 5 residues within 4Å: Chain G: E.65, M.68, P.69, G.70, Q.72 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.65, G:E.65, G:M.68, H2O.8, H2O.8 CA.76: 5 residues within 4Å: Chain S: E.65, M.68, P.69, G.70, Q.72 5 PLIP interactions: 3 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:E.65, S:E.65, S:M.68, H2O.19, H2O.20

4 x 9XX: (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate(Non-covalent)

9XX.40: 10 residues within 4Å: Chain D: F.75 Chain G: F.61, F.140, I.141 Chain K: C.24 Ligands: CDL.12, WUO.20, CDL.31, 9YF.39, PLM.41 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain D Hydrophobic interactions: G:F.61, D:F.75 9XX.43: 5 residues within 4Å: Chain C: F.320, Y.321, I.327, W.332 Chain L: C.21 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.320, C:F.320, C:F.320, C:F.320, C:F.320, C:F.320, C:I.327, C:I.327, C:W.332 9XX.84: 11 residues within 4Å: Chain P: V.71 Chain S: F.61, A.138, F.140, I.141 Chain W: C.24 Ligands: WUO.65, MQ9.69, HEA.73, 9YF.82, PLM.83 4 PLIP interactions: 3 interactions with chain S, 1 interactions with chain P Hydrophobic interactions: S:F.61, S:F.140, S:I.141, P:V.71 9XX.86: 6 residues within 4Å: Chain O: F.320, Y.321, P.322, W.332 Chain X: C.21 Ligands: PLM.85 6 PLIP interactions: 6 interactions with chain O Hydrophobic interactions: O:F.320, O:F.320, O:F.320, O:F.320, O:W.332 Hydrogen bonds: O:Y.321

4 x PLM: PALMITIC ACID(Covalent)

PLM.41: 12 residues within 4Å: Chain G: M.58, Q.78, Q.81, L.82, F.140, P.143, G.144, G.145 Chain K: C.24, S.25, A.26 Ligands: 9XX.40 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain K Hydrophobic interactions: G:L.82, G:F.140 Hydrogen bonds: K:S.25, K:A.26 PLM.42: 6 residues within 4Å: Chain C: W.318, E.319, F.320 Chain D: F.58, R.64 Chain L: C.21 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:W.318, C:W.318, C:W.318, C:W.318, C:F.320, D:F.58 PLM.83: 11 residues within 4Å: Chain S: M.58, Q.81, L.82, F.140, P.143, G.144, G.145 Chain W: C.24, S.25, A.26 Ligands: 9XX.84 5 PLIP interactions: 2 interactions with chain W, 3 interactions with chain S Hydrogen bonds: W:S.25, W:A.26 Hydrophobic interactions: S:L.82, S:F.140, S:F.140 PLM.85: 4 residues within 4Å: Chain O: W.318, E.319 Chain X: C.21 Ligands: 9XX.86 5 PLIP interactions: 5 interactions with chain O Hydrophobic interactions: O:W.318, O:W.318, O:W.318, O:W.318 Water bridges: O:E.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riepl, D. et al., Long-range charge transfer mechanism of the III 2 IV 2 mycobacterial supercomplex. Nat Commun (2024)

Release Date

2024-07-17

Peptides

Cytochrome bc1 complex cytochrome c subunit: AM
Cytochrome bc1 complex cytochrome c subunit: BN
Cytochrome bc1 complex cytochrome b subunit: CO
Transmembrane protein: DP
Probable cytochrome c oxidase subunit 3: EQ
Cytochrome c oxidase polypeptide 4: FR
Cytochrome c oxidase subunit 1: GS
cytochrome-c oxidase: HT
Cytochrome c oxidase subunit: IU
Uncharacterized protein MSMEG_4692/MSMEI_4575: JV
LpqE protein: KW
Superoxide dismutase [Cu-Zn]: LX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

M
C

B
M

N
G

C
N

O
H

D
P

P
I

E
S

Q
J

F
T

R
K

G
R

S
L

H
Q

T
X

I
U

U
Z

J
V

V
a

K
W

W
b

L
Y

X
c

Membrane

We predict this structure to be a membrane protein.
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Cytochrome bc1 complex cytochrome c subunit

Cytochrome bc1 complex cytochrome c subunit

Cytochrome bc1 complex cytochrome b subunit

Transmembrane protein

Probable cytochrome c oxidase subunit 3

Cytochrome c oxidase polypeptide 4

Cytochrome c oxidase subunit 1

cytochrome-c oxidase

Cytochrome c oxidase subunit

Uncharacterized protein MSMEG_4692/MSMEI_4575

LpqE protein

Superoxide dismutase [Cu-Zn]

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