- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEC: HEME C(Covalent)
- 10 x MQ9: MENAQUINONE-9(Non-covalent)
MQ9.3: 13 residues within 4Å:- Chain A: G.256, M.257, W.260
- Chain C: M.121, F.128, F.303, W.307, V.340, I.376, A.380, Y.384, M.392
- Ligands: CDL.9
12 PLIP interactions:8 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: C:F.128, C:F.303, C:W.307, C:V.340, C:I.376, C:Y.384, C:Y.384, A:M.257, A:W.260, A:W.260, A:W.260
- Hydrogen bonds: C:Y.384
MQ9.7: 25 residues within 4Å:- Chain A: Y.245, L.247, G.248, F.250, P.254, M.257
- Chain C: F.389, M.392, N.393, I.395, K.399, F.400, I.402, T.407
- Chain F: L.97, S.100, T.101, V.104, W.112
- Chain G: L.134, I.135, A.138
- Ligands: WUO.4, 9XX.25, 9YF.29
20 PLIP interactions:3 interactions with chain G, 3 interactions with chain A, 7 interactions with chain F, 7 interactions with chain C- Hydrophobic interactions: G:L.134, G:I.135, G:A.138, A:L.247, A:P.254, A:P.254, F:L.97, F:V.104, F:W.112, F:W.112, F:W.112, F:W.112, C:F.389, C:N.393, C:I.395, C:K.399, C:F.400, C:F.400, C:I.402
- pi-Stacking: F:W.112
MQ9.11: 13 residues within 4Å:- Chain C: E.44, L.47, Y.48, L.150, I.215, G.217, L.220, A.221, G.224, W.231
- Chain Q: L.220
- Ligands: MQ9.12, CDL.41
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain Q- Hydrophobic interactions: C:L.47, C:L.47, C:L.150, C:I.215, C:A.221, C:W.231, Q:L.220
MQ9.12: 18 residues within 4Å:- Chain C: V.142, F.156, A.174, L.175, I.178, M.189, M.305, T.308, A.334, V.335, M.337, G.338, A.342, L.343, I.345, A.346, F.349
- Ligands: MQ9.11
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:V.142, C:A.174, C:L.175, C:I.178, C:L.343, C:I.345, C:F.349
MQ9.35: 20 residues within 4Å:- Chain O: Y.245, L.247, G.248, F.250, A.253, P.254, M.257
- Chain Q: F.389, N.393, I.395, K.399, F.400, I.402, T.407
- Chain T: S.100, T.101, W.112
- Chain U: I.135, A.138
- Ligands: WUO.36
18 PLIP interactions:5 interactions with chain O, 2 interactions with chain U, 5 interactions with chain Q, 6 interactions with chain T- Hydrophobic interactions: O:L.247, O:F.250, O:P.254, O:P.254, O:M.257, U:I.135, U:A.138, Q:N.393, Q:I.395, Q:K.399, Q:F.400, Q:I.402, T:W.112, T:W.112, T:W.112
- pi-Stacking: T:W.112, T:W.112, T:W.112
MQ9.37: 11 residues within 4Å:- Chain B: F.123, I.127
- Chain C: F.104, V.105, M.254, G.262, F.265, T.269
- Chain P: T.198, A.201, F.202
9 PLIP interactions:3 interactions with chain P, 4 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: P:T.198, P:A.201, P:F.202, C:F.104, C:V.105, C:F.265, C:F.265, B:F.123, B:I.127
MQ9.42: 15 residues within 4Å:- Chain O: M.257, W.260
- Chain Q: M.121, A.125, F.128, F.303, M.306, V.340, L.343, I.376, A.380, I.381, Y.384, L.387, T.388
17 PLIP interactions:4 interactions with chain O, 13 interactions with chain Q- Hydrophobic interactions: O:W.260, O:W.260, O:W.260, Q:A.125, Q:F.128, Q:F.128, Q:F.128, Q:F.303, Q:I.376, Q:A.380, Q:I.381, Q:Y.384, Q:Y.384, Q:Y.384, Q:L.387, Q:T.388
- pi-Stacking: O:W.260
MQ9.47: 14 residues within 4Å:- Chain B: L.191, A.201, F.202
- Chain P: F.123, A.134
- Chain Q: L.55, V.105, A.258, V.259, G.262, F.265, A.266, T.269
- Ligands: MQ9.48
12 PLIP interactions:3 interactions with chain B, 7 interactions with chain Q, 2 interactions with chain P- Hydrophobic interactions: B:L.191, B:A.201, B:F.202, Q:L.55, Q:V.105, Q:A.258, Q:F.265, Q:F.265, Q:A.266, Q:T.269, P:F.123, P:A.134
MQ9.48: 15 residues within 4Å:- Chain C: L.213, L.214, I.218
- Chain Q: E.44, I.51, L.55, L.213, P.216, G.217, L.227, V.230, F.257
- Ligands: CDL.44, MQ9.47, HEM.50
7 PLIP interactions:5 interactions with chain Q, 2 interactions with chain C- Hydrophobic interactions: Q:I.51, Q:L.55, Q:L.213, Q:V.230, C:L.213, C:I.218
- Hydrogen bonds: Q:S.261
MQ9.49: 8 residues within 4Å:- Chain Q: A.174, L.175, T.308, M.337, F.341, A.342, I.345, A.346
4 PLIP interactions:4 interactions with chain Q- Hydrophobic interactions: Q:A.174, Q:A.342, Q:I.345, Q:A.346
- 4 x WUO: acyl-phosphatidyl-myo-inositol dimannoside (AcPIM2)(Non-covalent)
WUO.4: 19 residues within 4Å:- Chain A: G.195, A.237, P.240, S.241, Y.245, G.246, G.248, M.257, I.261
- Chain C: M.275, L.278, L.279
- Chain F: W.112, A.115, A.116, F.120
- Ligands: MQ9.7, CDL.9, CDL.10
10 PLIP interactions:3 interactions with chain C, 4 interactions with chain A, 3 interactions with chain F- Hydrophobic interactions: C:L.278, C:L.278, C:L.279, F:W.112, F:A.116, F:F.120
- Hydrogen bonds: A:S.241, A:Y.245, A:G.246, A:G.248
WUO.28: 18 residues within 4Å:- Chain D: V.68, H.70, V.71, W.74, F.75, G.78, V.82
- Chain G: F.61, F.73
- Chain H: L.335
- Chain K: C.24, G.27, Q.28, I.29
- Ligands: CDL.14, HEA.20, 9XX.25, 9YF.29
14 PLIP interactions:3 interactions with chain G, 7 interactions with chain D, 3 interactions with chain K, 1 interactions with chain H- Hydrophobic interactions: G:F.61, G:F.73, D:V.71, D:W.74, D:F.75, D:V.82
- Hydrogen bonds: G:F.73, D:H.70, D:V.71, K:C.24, K:Q.28, K:I.29, H:L.335
- Salt bridges: D:H.70
WUO.36: 18 residues within 4Å:- Chain O: K.181, D.193, G.195, A.237, P.240, S.241, G.244, Y.245, G.246, M.257, I.262
- Chain Q: L.274, L.278, L.279
- Chain T: W.112, F.120
- Ligands: MQ9.35, CDL.51
15 PLIP interactions:9 interactions with chain O, 4 interactions with chain Q, 2 interactions with chain T- Hydrophobic interactions: O:Y.245, O:I.262, Q:L.274, Q:L.278, Q:L.278, Q:L.279, T:W.112, T:F.120
- Hydrogen bonds: O:K.181, O:D.193, O:S.241, O:G.246, O:G.248
- Water bridges: O:Y.245
- Salt bridges: O:K.181
WUO.55: 18 residues within 4Å:- Chain Q: I.421
- Chain R: V.68, H.70, V.71, W.74, F.75, G.78, F.79, V.82
- Chain U: F.61, F.73
- Chain V: L.335
- Chain Y: G.27, Q.28, I.29
- Ligands: CDL.53, 9YF.67, 9XX.68
15 PLIP interactions:10 interactions with chain R, 2 interactions with chain Y, 2 interactions with chain U, 1 interactions with chain Q- Hydrophobic interactions: R:W.74, R:W.74, R:W.74, R:F.75, R:F.79, R:F.79, R:V.82, U:F.73, Q:I.421
- Hydrogen bonds: R:H.70, R:V.71, Y:Q.28, Y:I.29, U:F.73
- Salt bridges: R:H.70
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.5: 9 residues within 4Å:- Chain B: C.333, H.335, L.336, G.337, C.338, C.352, C.354, H.355, S.357
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.333, B:H.335, B:C.352, B:H.355
FES.39: 8 residues within 4Å:- Chain P: C.333, H.335, L.336, G.337, C.338, C.352, H.355, S.357
4 PLIP interactions:4 interactions with chain P,- Metal complexes: P:C.333, P:H.335, P:C.352, P:H.355
- 4 x 9YF: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate(Non-covalent)
9YF.6: 15 residues within 4Å:- Chain B: V.200, G.204, G.205, L.206, I.207, K.208, N.209, K.212
- Chain C: I.185, W.188, A.192
- Chain P: L.95, W.99
- Chain Q: E.98, R.100
14 PLIP interactions:2 interactions with chain P, 4 interactions with chain C, 2 interactions with chain Q, 6 interactions with chain B- Hydrophobic interactions: P:L.95, C:I.185, C:W.188, C:W.188, C:A.192, B:V.200, B:L.206, B:I.207
- Hydrogen bonds: P:E.100, Q:R.100, B:G.204, B:N.209
- Salt bridges: Q:R.100, B:K.212
9YF.29: 21 residues within 4Å:- Chain A: S.187
- Chain C: L.386, S.403, N.405, A.406, W.409, I.410, I.413, G.414
- Chain D: E.72, F.75, F.79
- Chain G: I.141
- Chain K: C.24, S.25, I.29, Q.31
- Ligands: MQ9.7, CDL.10, 9XX.25, WUO.28
13 PLIP interactions:1 interactions with chain A, 6 interactions with chain C, 1 interactions with chain K, 4 interactions with chain D, 1 interactions with chain G- Hydrogen bonds: A:S.187, C:S.403, C:N.405
- Hydrophobic interactions: C:L.386, C:W.409, C:I.410, C:I.413, D:F.75, D:F.75, D:F.75, D:F.79, G:I.141
- Water bridges: K:S.25
9YF.38: 12 residues within 4Å:- Chain B: L.95, W.99
- Chain C: E.98, R.100
- Chain P: V.200, G.204, G.205, I.207, K.208, N.209, K.212
- Chain Q: W.188
11 PLIP interactions:4 interactions with chain P, 3 interactions with chain Q, 1 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: P:V.200, P:I.207, Q:W.188, Q:W.188, Q:W.188, B:L.95
- Hydrogen bonds: P:N.209, C:R.100, C:R.100
- Salt bridges: P:K.212, C:R.100
9YF.67: 19 residues within 4Å:- Chain O: S.187
- Chain Q: L.386, S.403, N.405, A.406, W.409, I.410, I.413, G.414, V.417
- Chain R: V.71, E.72, F.75, F.79
- Chain U: I.141
- Chain Y: C.24, S.25, I.29
- Ligands: WUO.55
11 PLIP interactions:2 interactions with chain R, 9 interactions with chain Q- Hydrophobic interactions: R:F.79, Q:L.386, Q:A.406, Q:W.409, Q:I.410, Q:I.413, Q:I.413, Q:I.413, Q:V.417
- Hydrogen bonds: R:E.72, Q:S.403
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)
HEM.8: 18 residues within 4Å:- Chain C: F.50, L.53, L.54, G.57, L.60, I.95, R.106, H.109, H.110, A.113, E.154, G.158, Y.159, H.211, I.212, P.216, N.282
- Chain Q: L.213
17 PLIP interactions:16 interactions with chain C, 1 interactions with chain Q,- Hydrophobic interactions: C:F.50, C:L.53, C:L.53, C:L.54, C:L.60, C:E.154, C:Y.159, C:I.212, C:P.216, Q:L.213
- Salt bridges: C:R.106, C:R.106, C:H.110
- pi-Stacking: C:H.109
- pi-Cation interactions: C:H.109
- Metal complexes: C:H.109, C:H.211
HEM.13: 21 residues within 4Å:- Chain C: F.40, G.43, E.44, A.46, L.47, F.116, I.120, H.123, L.124, R.126, I.127, A.132, R.137, N.140, W.141, G.144, S.145, H.226, V.230, H.235, T.236
20 PLIP interactions:20 interactions with chain C,- Hydrophobic interactions: C:A.46, C:F.116, C:I.120, C:I.120, C:L.124, C:I.127, C:I.127, C:W.141, C:V.230, C:V.230
- Hydrogen bonds: C:G.43, C:R.137
- Salt bridges: C:H.123, C:R.126, C:R.126, C:H.235, C:H.235
- pi-Cation interactions: C:H.123
- Metal complexes: C:H.123, C:H.226
HEM.43: 19 residues within 4Å:- Chain C: L.213
- Chain Q: L.53, L.54, G.57, L.60, T.61, R.106, H.109, H.110, A.113, E.154, G.155, G.158, Y.159, P.162, Y.208, H.211, I.212, N.282
19 PLIP interactions:18 interactions with chain Q, 1 interactions with chain C,- Hydrophobic interactions: Q:L.53, Q:L.53, Q:L.54, Q:L.60, Q:L.60, Q:T.61, Q:A.113, Q:E.154, Q:Y.159, Q:Y.208, Q:I.212, Q:I.212, C:L.213
- Hydrogen bonds: Q:N.282
- Salt bridges: Q:R.106, Q:R.106, Q:H.110
- Metal complexes: Q:H.109, Q:H.211
HEM.50: 18 residues within 4Å:- Chain Q: F.40, G.43, A.46, I.120, H.123, L.124, R.126, I.127, A.132, R.137, W.141, G.144, L.147, H.226, V.230, H.235, T.236
- Ligands: MQ9.48
20 PLIP interactions:20 interactions with chain Q,- Hydrophobic interactions: Q:A.46, Q:I.120, Q:I.120, Q:I.127, Q:I.127, Q:I.127, Q:A.132, Q:W.141, Q:L.147, Q:V.230
- Hydrogen bonds: Q:G.43, Q:T.236
- Salt bridges: Q:H.123, Q:R.126, Q:R.126, Q:R.137, Q:H.235, Q:H.235
- pi-Cation interactions: Q:H.123
- Metal complexes: Q:H.226
- 16 x CDL: CARDIOLIPIN(Non-covalent)
CDL.9: 23 residues within 4Å:- Chain A: M.272, R.277, A.278
- Chain C: H.37, W.38, V.122, F.129, R.366, P.367, R.368, T.374, S.378, L.385, W.429, A.430, L.433, P.483
- Ligands: MQ9.3, WUO.4, CDL.10, CDL.17, CDL.22, 9XX.25
Ligand excluded by PLIPCDL.10: 22 residues within 4Å:- Chain C: R.368, W.429, L.433, L.484, K.486, R.487
- Chain F: W.90, W.91, L.94, L.97, S.98, T.101, F.120, T.123, S.124
- Chain G: Y.29, I.32
- Ligands: WUO.4, CDL.9, CDL.17, CDL.22, 9YF.29
Ligand excluded by PLIPCDL.14: 20 residues within 4Å:- Chain C: A.420, I.421, F.424, R.428
- Chain D: M.48, G.52, F.79, I.83, L.86, V.87, R.89, N.90, R.94
- Chain G: M.21, K.24, W.493, F.496
- Ligands: CDL.22, 9XX.25, WUO.28
Ligand excluded by PLIPCDL.17: 15 residues within 4Å:- Chain A: M.272, W.273, R.277
- Chain C: R.487, K.490
- Chain F: W.91, I.122, T.123, C.126, G.127, W.134, G.135
- Ligands: CDL.9, CDL.10, 7PH.16
Ligand excluded by PLIPCDL.18: 14 residues within 4Å:- Chain E: V.25, W.32, L.160, R.164, V.180, Y.184
- Chain F: V.125, V.129
- Chain G: F.118, P.119, R.120, L.121, L.124
- Chain N: X.11
Ligand excluded by PLIPCDL.22: 17 residues within 4Å:- Chain C: F.424, R.428
- Chain G: M.21, G.22, G.25, N.26, L.27, I.28, L.31, V.46, W.127, V.495, W.499
- Ligands: CDL.9, CDL.10, CDL.14, 9XX.25
Ligand excluded by PLIPCDL.40: 15 residues within 4Å:- Chain O: W.273
- Chain P: L.75, W.79, I.132, L.136, K.140
- Chain Q: F.502
- Chain S: V.159, L.162, A.163, K.166
- Chain T: F.130, W.134, K.138
- Ligands: CDL.51
Ligand excluded by PLIPCDL.41: 14 residues within 4Å:- Chain C: Y.20, V.26, R.28, Q.29, A.228, L.229, W.231, F.232, S.261
- Chain Q: Y.20, H.21, R.28
- Ligands: MQ9.11, CDL.44
Ligand excluded by PLIPCDL.44: 14 residues within 4Å:- Chain C: Y.20, H.21, P.22, R.28
- Chain Q: Y.20, A.25, V.26, R.28, Q.29, L.229, W.231, F.232
- Ligands: CDL.41, MQ9.48
Ligand excluded by PLIPCDL.45: 17 residues within 4Å:- Chain O: M.272, A.278
- Chain Q: H.37, W.38, V.122, F.129, R.366, P.367, R.368, S.378, A.426, W.429, A.430, L.433, P.483
- Ligands: CDL.46, CDL.51
Ligand excluded by PLIPCDL.46: 17 residues within 4Å:- Chain Q: R.368, W.429, L.433, L.484, K.486, R.487
- Chain T: W.90, I.93, L.94, L.97, S.98, F.120, S.124
- Chain U: Y.29, I.32
- Ligands: CDL.45, CDL.51
Ligand excluded by PLIPCDL.51: 18 residues within 4Å:- Chain O: I.262, A.266, M.272, W.273, R.277
- Chain Q: R.487, K.490
- Chain T: W.91, I.122, T.123, C.126, G.127, W.134, E.137
- Ligands: WUO.36, CDL.40, CDL.45, CDL.46
Ligand excluded by PLIPCDL.53: 15 residues within 4Å:- Chain Q: Y.423, F.424, R.428
- Chain R: M.48, V.82, A.85, L.86, R.89, N.90, L.93
- Chain U: M.21, F.496
- Ligands: CDL.54, WUO.55, CDL.63
Ligand excluded by PLIPCDL.54: 14 residues within 4Å:- Chain R: V.84, A.85, G.88, R.89, W.91, W.92, R.96, W.98
- Chain U: V.492, W.493, F.496, K.497, R.500
- Ligands: CDL.53
Ligand excluded by PLIPCDL.57: 17 residues within 4Å:- Chain S: W.32, L.149, G.153, A.157, L.160, L.161, R.164, V.180, Y.184
- Chain T: F.99, V.125, L.128
- Chain U: F.118, P.119, R.120, L.121
- Ligands: 7PH.56
Ligand excluded by PLIPCDL.63: 19 residues within 4Å:- Chain Q: F.424, R.428
- Chain U: M.21, G.22, P.23, K.24, G.25, N.26, L.27, I.28, L.31, I.42, C.45, V.46, V.495, F.496, W.499, R.500
- Ligands: CDL.53
Ligand excluded by PLIP- 3 x 7PH: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate(Non-covalent)
7PH.15: 5 residues within 4Å:- Chain E: V.125, T.130, P.132, Y.141
- Chain G: L.240
1 PLIP interactions:1 interactions with chain G- Hydrophobic interactions: G:L.240
7PH.16: 11 residues within 4Å:- Chain C: F.502
- Chain E: F.107, V.156, V.159, L.162, A.163, K.166, M.167
- Chain F: C.126, W.134
- Ligands: CDL.17
6 PLIP interactions:5 interactions with chain E, 1 interactions with chain C- Hydrophobic interactions: E:F.107, E:V.156, E:V.159, E:V.159, E:L.162, C:F.502
7PH.56: 9 residues within 4Å:- Chain S: Y.121, V.125, T.130, I.131, P.132, Y.141, L.142
- Chain U: L.240
- Ligands: CDL.57
5 PLIP interactions:4 interactions with chain S, 1 interactions with chain U- Hydrophobic interactions: S:Y.121, S:L.142, U:L.240
- Hydrogen bonds: S:T.130, S:I.131
- 4 x HEA: HEME-A(Non-covalent)
HEA.19: 31 residues within 4Å:- Chain G: W.151, T.152, W.260, H.264, V.267, Y.268, H.313, H.314, T.330, A.334, T.337, G.338, F.341, L.370, G.373, G.376, V.377, L.379, A.380, D.385, T.389, V.394, H.397, F.398, V.401, L.402, R.459
- Chain H: P.102, I.105, I.106
- Ligands: CU.21
21 PLIP interactions:19 interactions with chain G, 2 interactions with chain H,- Hydrophobic interactions: G:W.260, G:V.267, G:T.330, G:A.334, G:F.341, G:L.370, G:V.377, G:L.379, G:F.398, G:F.398, G:F.398, G:V.401, G:V.401, G:L.402, H:I.105, H:I.106
- Hydrogen bonds: G:W.151, G:Y.268, G:Y.268, G:T.389
- Salt bridges: G:R.459
HEA.20: 27 residues within 4Å:- Chain G: F.52, L.53, G.56, L.57, A.59, L.60, R.63, F.83, T.84, H.86, G.87, M.90, L.91, W.151, Y.392, I.395, F.398, H.399, L.402, F.403, I.406, F.446, R.459, R.460, L.484, G.485
- Ligands: WUO.28
21 PLIP interactions:21 interactions with chain G,- Hydrophobic interactions: G:F.52, G:L.60, G:M.90, G:L.91, G:L.91, G:I.395, G:L.402, G:I.406, G:F.446
- Hydrogen bonds: G:R.63, G:F.83, G:W.151, G:Q.449, G:R.459, G:R.460
- Salt bridges: G:R.460
- pi-Stacking: G:F.398, G:H.399, G:F.446
- Metal complexes: G:H.86, G:H.399
HEA.58: 27 residues within 4Å:- Chain U: W.151, W.260, V.267, Y.268, H.313, H.314, T.330, A.334, G.338, L.370, G.373, G.376, V.377, L.379, A.380, D.385, T.389, V.394, H.397, F.398, V.401, L.402, R.459
- Chain V: P.102, I.105, I.106
- Ligands: CU.60
18 PLIP interactions:3 interactions with chain V, 15 interactions with chain U,- Hydrophobic interactions: V:P.102, V:I.105, V:I.106, U:W.151, U:W.260, U:V.267, U:V.267, U:T.330, U:L.370, U:V.377, U:F.398, U:F.398, U:V.401, U:V.401, U:L.402
- Hydrogen bonds: U:W.151, U:Y.268
- Salt bridges: U:R.459
HEA.59: 29 residues within 4Å:- Chain U: F.52, L.53, G.56, L.60, M.62, R.63, F.79, F.83, H.86, G.87, M.90, L.91, G.150, W.151, Y.392, I.395, F.398, H.399, L.402, F.403, F.446, R.459, R.460, Y.461, A.481, L.484, G.485, M.488
- Ligands: 9XX.68
20 PLIP interactions:20 interactions with chain U,- Hydrophobic interactions: U:F.52, U:F.52, U:L.60, U:I.395, U:F.398, U:F.398, U:L.402, U:L.402, U:F.446, U:A.481
- Hydrogen bonds: U:R.63, U:W.151, U:Y.392, U:Q.449, U:R.460, U:Y.461
- Salt bridges: U:R.459, U:R.460
- Metal complexes: U:H.86, U:H.399
- 6 x CU: COPPER (II) ION(Non-covalent)
CU.21: 4 residues within 4Å:- Chain G: H.264, H.313, H.314
- Ligands: HEA.19
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:H.264, G:H.313, G:H.314
CU.26: 5 residues within 4Å:- Chain H: C.273, M.276, C.277, H.281
- Ligands: CU.27
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:C.273, H:C.277, H:H.281
CU.27: 5 residues within 4Å:- Chain H: H.232, C.273, C.277, M.284
- Ligands: CU.26
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:H.232, H:C.273, H:C.277
CU.60: 4 residues within 4Å:- Chain U: H.264, H.313, H.314
- Ligands: HEA.58
3 PLIP interactions:3 interactions with chain U- Metal complexes: U:H.264, U:H.313, U:H.314
CU.65: 5 residues within 4Å:- Chain V: C.273, E.275, C.277, H.281
- Ligands: CU.66
4 PLIP interactions:4 interactions with chain V- Metal complexes: V:C.273, V:E.275, V:C.277, V:H.281
CU.66: 5 residues within 4Å:- Chain V: H.232, C.273, C.277, M.284
- Ligands: CU.65
3 PLIP interactions:3 interactions with chain V- Metal complexes: V:H.232, V:C.273, V:C.277
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.24: 5 residues within 4Å:- Chain G: E.65, L.66, M.68, G.70, Q.72
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:E.65, G:M.68, G:G.70
CA.62: 4 residues within 4Å:- Chain U: E.65, M.68, G.70, Q.72
4 PLIP interactions:4 interactions with chain U- Metal complexes: U:E.65, U:E.65, U:M.68, U:G.70
- 4 x 9XX: (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate(Non-covalent)
9XX.25: 13 residues within 4Å:- Chain C: L.418
- Chain D: F.75, F.79
- Chain G: F.140, I.141
- Chain K: C.24
- Ligands: MQ9.7, CDL.9, CDL.14, CDL.22, WUO.28, 9YF.29, PLM.30
3 PLIP interactions:1 interactions with chain D, 1 interactions with chain C, 1 interactions with chain G- Hydrophobic interactions: D:F.79, C:L.418, G:I.141
9XX.32: 4 residues within 4Å:- Chain C: F.320, Y.321, I.327
- Chain L: C.21
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:F.320, C:F.320, C:I.327
9XX.52: 5 residues within 4Å:- Chain Q: F.320, Y.321, P.322
- Chain Z: C.21
- Ligands: PLM.69
4 PLIP interactions:4 interactions with chain Q- Hydrophobic interactions: Q:F.320, Q:F.320, Q:F.320
- Hydrogen bonds: Q:Y.321
9XX.68: 7 residues within 4Å:- Chain U: V.54, I.137, I.141
- Chain Y: C.24
- Ligands: WUO.55, HEA.59, PLM.64
4 PLIP interactions:4 interactions with chain U- Hydrophobic interactions: U:V.54, U:V.54, U:I.137, U:I.141
- 4 x PLM: PALMITIC ACID(Non-covalent)(Covalent)
PLM.30: 4 residues within 4Å:- Chain G: F.140, G.144
- Chain K: C.24
- Ligands: 9XX.25
2 PLIP interactions:1 interactions with chain K, 1 interactions with chain G- Hydrogen bonds: K:C.24
- Hydrophobic interactions: G:F.140
PLM.31: 4 residues within 4Å:- Chain C: W.318, E.319
- Chain D: R.64
- Chain L: C.21
2 PLIP interactions:1 interactions with chain L, 1 interactions with chain C- Hydrogen bonds: L:C.21
- Hydrophobic interactions: C:W.318
PLM.64: 8 residues within 4Å:- Chain U: Q.81, F.140, P.143, G.144, G.145
- Chain Y: C.24, A.26
- Ligands: 9XX.68
2 PLIP interactions:1 interactions with chain U, 1 interactions with chain Y- Hydrophobic interactions: U:F.140
- Hydrogen bonds: Y:A.26
PLM.69: 5 residues within 4Å:- Chain Q: W.318, F.320
- Chain R: R.64
- Chain Z: C.21
- Ligands: 9XX.52
5 PLIP interactions:4 interactions with chain Q, 1 interactions with chain Z- Hydrophobic interactions: Q:W.318, Q:W.318, Q:W.318, Q:F.320
- Hydrogen bonds: Z:C.21
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Riepl, D. et al., Long-range charge transfer mechanism of the III 2 IV 2 mycobacterial supercomplex. Nat Commun (2024)
- Release Date
- 2024-07-17
- Peptides
- Cytochrome bc1 complex cytochrome c subunit: AO
Cytochrome bc1 complex cytochrome c subunit: BP
Cytochrome bc1 complex cytochrome b subunit: CQ
Transmembrane protein: DR
Probable cytochrome c oxidase subunit 3: ES
Cytochrome c oxidase polypeptide 4: FT
Cytochrome c oxidase subunit 1: GU
cytochrome-c oxidase: HV
Cytochrome c oxidase subunit: IW
Uncharacterized protein MSMEG_4692/MSMEI_4575: JX
LpqE protein: KY
Superoxide dismutase [Cu-Zn]: LZ
Co-purified unknown peptide: M1
Co-purified unknown peptide: N0 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
OO
CB
MP
GC
NQ
HD
PR
IE
SS
JF
TT
KG
RU
LH
QV
XI
UW
ZJ
VX
aK
WY
bL
YZ
cM
E1
fN
F0
e - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEC: HEME C(Covalent)
- 10 x MQ9: MENAQUINONE-9(Non-covalent)
- 4 x WUO: acyl-phosphatidyl-myo-inositol dimannoside (AcPIM2)(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 4 x 9YF: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)
- 16 x CDL: CARDIOLIPIN(Non-covalent)
- 3 x 7PH: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate(Non-covalent)
- 4 x HEA: HEME-A(Non-covalent)
- 6 x CU: COPPER (II) ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 4 x 9XX: (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate(Non-covalent)
- 4 x PLM: PALMITIC ACID(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Riepl, D. et al., Long-range charge transfer mechanism of the III 2 IV 2 mycobacterial supercomplex. Nat Commun (2024)
- Release Date
- 2024-07-17
- Peptides
- Cytochrome bc1 complex cytochrome c subunit: AO
Cytochrome bc1 complex cytochrome c subunit: BP
Cytochrome bc1 complex cytochrome b subunit: CQ
Transmembrane protein: DR
Probable cytochrome c oxidase subunit 3: ES
Cytochrome c oxidase polypeptide 4: FT
Cytochrome c oxidase subunit 1: GU
cytochrome-c oxidase: HV
Cytochrome c oxidase subunit: IW
Uncharacterized protein MSMEG_4692/MSMEI_4575: JX
LpqE protein: KY
Superoxide dismutase [Cu-Zn]: LZ
Co-purified unknown peptide: M1
Co-purified unknown peptide: N0 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
OO
CB
MP
GC
NQ
HD
PR
IE
SS
JF
TT
KG
RU
LH
QV
XI
UW
ZJ
VX
aK
WY
bL
YZ
cM
E1
fN
F0
e - Membrane
-
We predict this structure to be a membrane protein.