SMTL ID : 8oy2.1

Human cyclin-dependent kinase 2 in complex with inhibitor HB-29260

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

monomer

Ligands

1 x W5W: (1S,2S,11aS)-1-methoxy-1,4,7,10-tetramethyl-2,9-bis(oxidanyl)-2,11a-dihydrobenzo[b][1,4]benzodioxepine-3,6-dione(Non-covalent)

W5W.1: 12 residues within 4Å: Chain A: I.12, V.20, A.33, V.66, F.82, E.83, F.84, L.85, D.88, Q.133, L.136, D.147 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.12, A:I.12, A:V.66, A:F.82, A:F.82 Hydrogen bonds: A:L.85, A:D.88, A:D.88

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: G.15, T.16, Y.17, K.35, D.147 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.16, A:T.16, A:T.16, A:Y.17, A:D.147 Water bridges: A:G.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunbar, K.L. et al., Resistance gene-guided genome mining reveals the roseopurpurins as inhibitors of cyclin-dependent kinases. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-11-29

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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