SMTL ID : 8oyh.1

X-ray structure of furin (PCSK3) in complex with Guanidinomethyl-Phac-Can-Tle-Can-6-(aminomethyl)-3-amino-isoindol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 3U0- GGB- TBG- GGB- OZ3: Guanidinomethyl-Phac-Can-Tle-Can-6-(aminomethyl)-3-amino-isoindol(Non-covalent)

3U0-GGB-TBG-GGB-OZ3.1: 32 residues within 4Å: Chain A: D.46, D.47, D.84, N.85, H.87, L.120, D.121, E.123, V.124, T.125, D.126, E.129, S.146, W.147, G.148, P.149, E.150, D.151, D.157, G.158, P.159, A.160, W.184, A.185, S.186, G.187, N.188, D.199, Y.201, T.202, T.260, S.261 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.124, A:A.185 Hydrogen bonds: A:V.124, A:S.146, A:G.148, A:G.148, A:E.150, A:W.184, A:A.185, A:D.199, A:Y.201, A:Y.201 Water bridges: A:H.87, A:D.126, A:E.129, A:D.151, A:A.160, A:N.188, A:N.188 Salt bridges: A:D.47, A:E.129, A:E.129, A:D.157

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.67, D.70, D.72, D.74, R.118 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.67, A:D.74, H2O.2, H2O.5, H2O.12 CA.3: 8 residues within 4Å: Chain A: D.8, D.55, V.98, A.99, N.101, V.103, G.105, V.106 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.8, A:D.55, A:V.98, A:V.103, A:G.105 CA.4: 6 residues within 4Å: Chain A: D.151, G.187, D.194, C.196, D.199, E.224 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.194, A:E.224, H2O.3, H2O.4, H2O.5

3 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: T.202, S.204, T.207, S.209, M.427 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.207, A:T.207, A:S.209 NA.6: 2 residues within 4Å: Chain A: S.172, G.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.172 NA.7: 3 residues within 4Å: Chain A: P.401, S.437, G.438 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.437

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 4 residues within 4Å: Chain A: F.168, Y.206, K.342, Y.464 Ligand excluded by PLIP

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.9: 8 residues within 4Å: Chain A: V.156, D.157, R.391, D.419, G.420, F.421, N.422, W.424 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.422 DMS.10: 5 residues within 4Å: Chain A: V.219, A.301, N.302, D.303, S.316 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lange, R.W. et al., Fragment-Based Design, Synthesis, and Characterization of Aminoisoindole-Derived Furin Inhibitors. Chemmedchem (2024)

Release Date

2024-03-13

Peptides

Furin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Furin

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