SMTL ID : 8oz1.1

CjCel5D endo-xyloglucanase bounc to CB665 covalent inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x BO3: BORIC ACID(Non-covalent)

BO3.1: 3 residues within 4Å: Chain A: Q.200, D.204, A.239 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.204 Water bridges: A:Q.200

1 x RBH: ~{N}-[(2~{S},3~{S},4~{S},5~{R})-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]-2-oxidanyl-ethanamide(Non-covalent)

RBH.2: 7 residues within 4Å: Chain A: N.60, W.71, R.262, W.360, N.362 Ligands: YLL.3, XYS.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.60, A:N.60, A:W.360, A:N.362 Water bridges: A:H.136, A:R.262, A:R.262, A:R.262, A:S.370

1 x YLL: (1R,2S,3S,4S,5R,6R)-6-(HYDROXYMETHYL)CYCLOHEXANE-1,2,3,4,5-PENTOL(Covalent)

YLL.3: 12 residues within 4Å: Chain A: N.60, R.93, H.136, N.182, E.183, H.251, Y.253, L.260, E.318, W.360 Ligands: RBH.2, XYS.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.318 Hydrogen bonds: A:H.136, A:N.182, A:E.183, A:E.318, A:W.360 Water bridges: A:N.60, A:E.183

1 x XYS: alpha-D-xylopyranose(Non-covalent)

XYS.4: 6 residues within 4Å: Chain A: W.71, H.136, W.137, E.143 Ligands: RBH.2, YLL.3 4 PLIP interactions: 4 interactions with chain A Water bridges: A:W.137, A:W.137, A:N.144, A:E.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGregor, N.G.S. et al., A Multiplexing Activity-Based Protein-Profiling Platform for Dissection of a Native Bacterial Xyloglucan-Degrading System. Acs Cent.Sci. (2023)

Release Date

2024-02-28

Peptides

Cellulase, putative, cel5D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellulase, putative, cel5D

Related Entries With Identical Sequence