SMTL ID : 8p0m.1

Crystal structure of TEAD3 in complex with IAG933

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

hetero-2-2-mer

Ligands

3 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)

1PG.1: 7 residues within 4Å: Chain A: S.17, F.19, E.21, Y.29, K.31, L.33, H.36 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.17, A:K.31 1PG.4: 8 residues within 4Å: Chain B: S.17, F.19, E.21, Y.29, K.31, L.33, S.104, H.149 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.21, B:K.31 1PG.9: 12 residues within 4Å: Chain C: E.21, Y.29, K.31, R.150 Chain D: S.17, F.19, E.21, Y.29, K.31, L.33, S.104, H.149 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:R.150, D:E.21, D:E.21, D:K.31, D:S.104

2 x MYR: MYRISTIC ACID(Covalent)

MYR.2: 14 residues within 4Å: Chain A: Y.16, A.18, V.35, V.103, T.119, K.131, C.154, M.157, F.160, I.161, L.177, F.180, I.182, F.202 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.18, A:V.35, A:V.103, A:T.119, A:M.157, A:F.160, A:I.161, A:L.177, A:F.180, A:F.202 Hydrogen bonds: A:C.154 MYR.5: 13 residues within 4Å: Chain B: Y.16, A.18, V.35, V.103, T.119, K.131, C.154, M.157, F.160, L.177, F.180, I.182, F.202 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:A.18, B:V.35, B:V.103, B:T.119, B:M.157, B:F.160, B:L.177, B:F.180, B:F.202 Hydrogen bonds: B:C.154

4 x WCF: 4-[(2~{S})-5-chloranyl-6-fluoranyl-2-phenyl-2-[(2~{S})-pyrrolidin-2-yl]-3~{H}-1-benzofuran-4-yl]-5-fluoranyl-6-(2-hydroxyethyloxy)-~{N}-methyl-pyridine-3-carboxamide(Non-covalent)

WCF.3: 14 residues within 4Å: Chain A: V.52, Q.56, I.57, K.60, L.82, K.84, F.85, W.86, E.178, T.181, V.201, F.202, E.203, Y.216 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.84, A:W.86, A:E.178, A:V.201, A:V.201, A:E.203 Hydrogen bonds: A:Q.56, A:Y.216 Water bridges: A:K.84, A:K.84, A:F.202 pi-Cation interactions: A:K.60 WCF.6: 14 residues within 4Å: Chain B: V.52, Q.56, I.57, K.60, L.82, K.84, F.85, W.86, E.178, T.181, V.201, F.202, E.203, Y.216 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:K.84, B:K.84, B:W.86, B:E.178, B:V.201, B:V.201, B:E.203 Hydrogen bonds: B:Q.56, B:Y.216 Water bridges: B:K.84, B:K.84, B:F.202 pi-Cation interactions: B:K.60 WCF.8: 15 residues within 4Å: Chain C: V.52, Q.56, I.57, K.60, F.61, L.82, K.84, F.85, W.86, E.178, T.181, V.201, F.202, E.203, Y.216 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:K.84, C:W.86, C:E.178, C:V.201, C:V.201, C:E.203 Hydrogen bonds: C:Q.56, C:E.203, C:Y.216 Water bridges: C:K.84, C:F.202 pi-Cation interactions: C:K.60 WCF.11: 14 residues within 4Å: Chain D: V.52, Q.56, I.57, K.60, L.82, K.84, F.85, W.86, E.178, T.181, V.201, F.202, E.203, Y.216 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:K.84, D:W.86, D:E.178, D:V.201, D:V.201, D:E.203, D:E.203 Hydrogen bonds: D:Q.56, D:Y.216 Water bridges: D:K.60, D:F.202 pi-Cation interactions: D:K.60

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.7: 6 residues within 4Å: Chain B: Y.136 Chain C: R.138, L.139, E.140, N.141 Chain D: Y.136 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.141 Water bridges: C:G.142 DMS.10: 6 residues within 4Å: Chain A: Y.136 Chain C: Y.136 Chain D: R.138, L.139, E.140, N.141 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D pi-Cation interactions: C:Y.136 Hydrogen bonds: D:N.141 Water bridges: D:G.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chapeau, E.A. et al., Direct and selective pharmacological disruption of the YAP-TEAD interface by IAG933 inhibits Hippo-dependent and RAS-MAPK-altered cancers. Nat Cancer (2024)

Release Date

2024-04-10

Peptides

Transcriptional enhancer factor TEF-5: AB
Transcriptional enhancer factor TEF-5: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Transcriptional enhancer factor TEF-5

Transcriptional enhancer factor TEF-5

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