SMTL ID : 8p6o.1

Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant Y220F in complex with di-mannuronic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

1 x MAV- BEM: beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid(Non-covalent)

MAV-BEM.1: 9 residues within 4Å: Chain A: P.115, R.118, T.139, R.141, F.151, K.153, F.206, N.208, N.209 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.118, A:K.153, A:N.209, A:R.118, A:R.118 Water bridges: A:R.118, A:H.110, A:R.141, A:R.141, A:N.208, A:N.208, A:N.209, A:N.209, A:N.209 Salt bridges: A:R.118, A:R.141

1 x BEM- BEM: beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid(Non-covalent)

BEM-BEM.2: 11 residues within 4Å: Chain A: K.20, Q.22, S.26, A.27, R.62, R.66, E.75, Q.108, H.110, Y.200, K.202 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.22, A:Q.22, A:S.26, A:R.62, A:R.62, A:H.110, A:K.202 Water bridges: A:S.26, A:Q.108

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: Q.47, V.93, P.95, R.218, K.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.47 Water bridges: A:A.161, A:K.220, A:K.220 Salt bridges: A:R.218, A:K.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilkens, C., Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant Y220F in complex with di-mannuronic acid. To Be Published

Release Date

2023-07-05

Peptides

Alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alginate lyase

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