SMTL ID : 8pds.1

Local refinement of dimeric HMPV N-RNA bound to the C-terminal region of P

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ASP- ILE- TYR- GLN- LEU- ILE- MET: Phosphoprotein(Non-covalent)

ASP-ILE-TYR-GLN-LEU-ILE-MET.1: 15 residues within 4Å: Chain A: L.46, Y.53, I.103, K.104, N.106, L.111, D.128, K.129, R.132, K.133, M.135, L.139, R.151, P.152, S.153 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.46, A:I.103, A:I.103, A:L.111, A:K.129, A:R.132, A:K.133, A:L.139 Hydrogen bonds: A:K.104, A:R.132, A:S.153 ASP-ILE-TYR-GLN-LEU-ILE-MET.2: 12 residues within 4Å: Chain C: L.46, Y.53, I.103, N.106, L.111, R.132, K.133, M.135, A.136, R.151, P.152, S.153 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:L.46, C:I.103, C:L.111, C:R.132, C:K.133 Hydrogen bonds: C:R.132, C:S.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whitehead, J.D. et al., Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus. Nat Commun (2023)

Release Date

2023-12-06

Peptides

Nucleoprotein: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

Nucleoprotein

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