SMTL ID : 8pi1.2 (4 other biounits)

Bicyclic INCYPRO Pseudomonas fluorescens esterase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

2 x ZIZ: N-[2-[3,5-bis[2-(2-iodanylethanoylamino)ethanoyl]-1,3,5-triazinan-1-yl]-2-oxidanylidene-ethyl]-2-iodanyl-ethanamide(Covalent)

ZIZ.1: 11 residues within 4Å: Chain A: C.3, F.4, V.5, Q.11 Chain B: C.3, V.5, Q.11 Chain C: C.3, F.4, V.5, Q.11 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 2 interactions with chain C Hydrogen bonds: B:Q.11, A:Q.11, C:Q.11 Hydrophobic interactions: C:Q.11 ZIZ.2: 4 residues within 4Å: Chain A: C.174, T.178 Chain B: C.174 Chain C: C.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.178

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: K.168, G.222, Q.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.168, A:K.168, A:D.221 GOL.4: 7 residues within 4Å: Chain A: D.62, Q.63 Chain B: S.2, Y.13, K.15, D.16, W.17 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.2, B:S.2, B:Y.13, B:D.16, B:W.17, A:Q.63 GOL.5: 7 residues within 4Å: Chain A: L.138, F.141, A.142, K.145, T.197, A.200, E.201 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.145, A:T.197 GOL.6: 7 residues within 4Å: Chain B: D.62, Q.63 Chain C: S.2, Y.13, F.14, K.15, D.16 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:S.2, C:Y.13, C:Y.13, C:D.16, C:D.16, B:Q.63 GOL.7: 7 residues within 4Å: Chain A: S.2, Y.13, F.14, K.15, D.16 Chain C: D.62, Q.63 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:S.2, A:Y.13, A:D.16, A:D.16, C:D.62, C:Q.63 GOL.8: 4 residues within 4Å: Chain C: K.168, D.221, G.222, Q.224 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hutchins, G.H. et al., Covalent bicyclization of protein complexes yields durable quaternary structures. Chem (2024)

Release Date

2023-11-01

Peptides

Arylesterase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Arylesterase

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