SMTL ID : 8pi1.4 (4 other biounits)

Bicyclic INCYPRO Pseudomonas fluorescens esterase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: S.2, Y.13, F.14, K.15, D.16 Chain C: D.62, Q.63 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:S.2, A:Y.13, A:Y.13, A:D.16, A:D.16, C:Q.63 GOL.2: 5 residues within 4Å: Chain A: L.138, A.142, K.145, T.197, E.201 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.145, A:E.201 GOL.5: 7 residues within 4Å: Chain A: D.62, Q.63 Chain B: S.2, Y.13, F.14, K.15, D.16 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.2, B:Y.13, B:Y.13, B:D.16, B:D.16, A:D.62, A:Q.63 Water bridges: A:Q.63 GOL.6: 6 residues within 4Å: Chain B: L.138, F.141, A.142, K.145, T.197, E.201 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.145, B:E.201 GOL.7: 2 residues within 4Å: Chain B: A.242, E.243 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.244 GOL.8: 8 residues within 4Å: Chain B: L.31, D.34, M.35, Y.164, V.176, Q.179, T.180, V.256 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.164, B:V.176, B:Q.179 GOL.9: 7 residues within 4Å: Chain B: D.62, Q.63 Chain C: S.2, Y.13, F.14, K.15, D.16 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:S.2, C:S.2, C:Y.13, C:Y.13, C:D.16, C:D.16, B:D.62, B:Q.63 GOL.10: 7 residues within 4Å: Chain C: L.31, M.35, Y.164, V.176, Q.179, T.180, V.256 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.164, C:V.176 GOL.11: 7 residues within 4Å: Chain C: L.138, F.141, A.142, K.145, T.197, A.200, E.201 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.145, C:E.201

2 x ZIZ: N-[2-[3,5-bis[2-(2-iodanylethanoylamino)ethanoyl]-1,3,5-triazinan-1-yl]-2-oxidanylidene-ethyl]-2-iodanyl-ethanamide(Covalent)

ZIZ.3: 9 residues within 4Å: Chain A: C.3, Q.11 Chain B: C.3, F.4, V.5, Q.11 Chain C: C.3, F.4, Q.11 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: B:Q.11, A:Q.11, C:Q.11 ZIZ.4: 3 residues within 4Å: Chain A: C.174 Chain B: C.174 Chain C: C.174 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hutchins, G.H. et al., Covalent bicyclization of protein complexes yields durable quaternary structures. Chem (2024)

Release Date

2023-11-01

Peptides

Arylesterase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

Arylesterase

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