SMTL ID : 8pjo.1

Cryo EM structure of the type 3D polymorph of alpha-synuclein E46K mutant at low pH.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-10-mer

Ligands

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: H.50, G.51, V.52 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain B: G.51, V.52 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: H.50, G.51, A.53 Chain C: G.51, V.52 Ligand excluded by PLIP CL.4: 7 residues within 4Å: Chain B: H.50, G.51, A.53 Chain D: H.50, G.51, V.52, A.53 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain C: H.50, G.51, A.53 Chain E: G.51, V.52 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain D: H.50, G.51, A.53 Chain F: G.51, V.52 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain E: H.50, G.51, A.53 Chain G: H.50, G.51, V.52, A.53 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain F: H.50, G.51, A.53 Chain H: H.50, G.51, V.52 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain G: H.50, G.51, A.53 Chain I: G.51, V.52, A.53 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain H: H.50, G.51, A.53 Chain J: G.51, V.52, A.53 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frey, L. et al., On the pH-dependence of alpha-synuclein amyloid polymorphism and the role of secondary nucleation in seed-based amyloid propagation. Elife (2024)

Release Date

2024-05-29

Peptides

Alpha-synuclein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Alpha-synuclein

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