SMTL ID : 8po1.1

Discovery and Optimisation of Potent, Efficacious and Selective Inhibitors Targeting EGFR Exon20 Insertion Mutations. Compound 22 bound to EGFRinsNPG [V948R]

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x 2EI: 2-methyl-5-[[3-[1-[(3~{S},5~{R})-5-methyl-1-propanoyl-pyrrolidin-3-yl]-4-pyridin-4-yl-pyrazol-3-yl]phenoxy]methyl]-3~{H}-isoindol-1-one(Covalent)

2EI.1: 25 residues within 4Å: Chain A: L.25, S.27, V.33, A.50, K.52, M.73, A.74, D.77, C.85, L.87, L.98, T.100, Q.101, L.102, M.103, C.107, D.110, R.151, L.154, T.164, D.165, F.166, L.168 Ligands: IOD.2, IOD.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.33, A:V.33, A:A.50, A:K.52, A:L.87, A:L.98, A:L.154, A:F.166, A:F.166, A:L.168 Hydrogen bonds: A:K.52, A:M.103 Water bridges: A:L.87

20 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: G.106 Ligands: 2EI.1 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: R.151 Ligands: 2EI.1 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: I.188, K.189 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: P.269, E.277 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: K.20 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: Y.225, D.226, P.244 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: M.262, I.263 Ligand excluded by PLIP IOD.9: 1 residues within 4Å: Chain A: P.104 Ligand excluded by PLIP IOD.10: 1 residues within 4Å: Chain A: T.219 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain A: N.81, K.133 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain A: H.203, Q.204 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: I.22, Y.34 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: W.190, K.223 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain A: A.230, S.231 Ligand excluded by PLIP IOD.16: 5 residues within 4Å: Chain A: M.73, R.142, L.143, V.144, K.170 Ligand excluded by PLIP IOD.17: 2 residues within 4Å: Chain A: H.160, K.162 Ligand excluded by PLIP IOD.18: 2 residues within 4Å: Chain A: N.81, P.82 Ligand excluded by PLIP IOD.19: 1 residues within 4Å: Chain A: P.244 Ligand excluded by PLIP IOD.20: 2 residues within 4Å: Chain A: K.35, P.104 Ligand excluded by PLIP IOD.21: 4 residues within 4Å: Chain A: S.27, F.30, G.31, K.52 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thomson, C. et al., Discovery and Optimization of Potent, Efficacious and Selective Inhibitors Targeting EGFR Exon20 Insertion Mutations. J.Med.Chem. (2024)

Release Date

2024-06-05

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epidermal growth factor receptor

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