SMTL ID : 8q03.1 (1 other biounit)

Metagenomic lipase ORF30

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: I.80, E.81, W.159, K.162, N.163 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.81, A:W.159, A:K.162, A:N.163, A:N.163 Water bridges: A:E.81 GOL.5: 3 residues within 4Å: Chain B: V.161, K.162, E.171 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.162 Water bridges: B:E.171

2 x BUA: butanoic acid(Non-covalent)

BUA.2: 7 residues within 4Å: Chain A: G.107, G.108, G.109, S.179, A.180, L.229, H.304 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.229 Hydrogen bonds: A:G.108, A:G.109, A:S.179, A:A.180 Salt bridges: A:H.304 BUA.6: 6 residues within 4Å: Chain B: G.108, G.109, S.179, A.180, L.229, H.304 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.229 Hydrogen bonds: B:G.108, B:G.109, B:S.179, B:A.180 Salt bridges: B:H.304

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: P.23, R.31, R.273 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.31, A:R.273 SO4.4: 2 residues within 4Å: Chain A: K.71, R.91 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.71, A:K.71, A:R.91 Salt bridges: A:K.71, A:R.91 SO4.7: 3 residues within 4Å: Chain B: P.23, R.31, R.273 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.31, B:R.273 SO4.8: 3 residues within 4Å: Chain B: I.80, E.81, W.159 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.81, B:W.159 Water bridges: B:N.163 SO4.9: 3 residues within 4Å: Chain B: K.71, S.72, R.91 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.91 SO4.10: 2 residues within 4Å: Chain B: S.27, D.28 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.28 Water bridges: B:S.27, B:E.29 SO4.11: 3 residues within 4Å: Chain B: R.193, D.194, H.261 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.193 Water bridges: B:K.199, B:K.199, B:K.199, B:K.199 Salt bridges: B:H.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rangel Pereira, M. et al., Lipases isolated from metagenomic libraries. To Be Published

Release Date

2024-08-07

Peptides

ORF30: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ORF30