SMTL ID : 8q03.2 (1 other biounit)

Metagenomic lipase ORF30

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: K.156, G.160, T.161, E.162, V.163 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.156, A:T.161, A:T.161, A:E.162, A:V.163 GOL.9: 5 residues within 4Å: Chain B: K.156, G.160, T.161, E.162, V.163 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.156, B:T.161, B:E.162, B:V.163

2 x BUA: butanoic acid(Non-covalent)

BUA.2: 8 residues within 4Å: Chain A: G.98, G.99, G.100, W.101, S.170, A.171, L.220, H.295 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.101, A:L.220 Hydrogen bonds: A:G.99, A:G.100, A:A.171 Water bridges: A:R.50 Salt bridges: A:H.295 BUA.10: 8 residues within 4Å: Chain B: G.98, G.99, G.100, W.101, S.170, A.171, L.220, H.295 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:W.101, B:L.220 Hydrogen bonds: B:G.99, B:G.100, B:A.171 Water bridges: B:R.50 Salt bridges: B:H.295

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: P.14, R.22, R.264 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.22, A:R.264 SO4.4: 4 residues within 4Å: Chain A: K.62, A.66, R.82 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.63 Salt bridges: A:K.62, A:R.82 SO4.5: 3 residues within 4Å: Chain A: R.67, T.68 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.68, A:T.68, A:T.68 SO4.6: 3 residues within 4Å: Chain A: I.71, E.72, W.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.72 SO4.7: 2 residues within 4Å: Chain A: S.18, D.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.19 Water bridges: A:E.20 SO4.8: 4 residues within 4Å: Chain A: R.65, P.86, A.117, Q.118 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.118 Salt bridges: A:R.65 SO4.11: 3 residues within 4Å: Chain B: P.14, R.22, R.264 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.22, B:R.264 SO4.12: 4 residues within 4Å: Chain B: K.62, A.66, R.82 Ligands: SO4.13 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.63 Water bridges: B:T.68 Salt bridges: B:K.62, B:R.82 SO4.13: 3 residues within 4Å: Chain B: R.67, T.68 Ligands: SO4.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.68, B:T.68 SO4.14: 3 residues within 4Å: Chain B: I.71, E.72, W.150 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.72 SO4.15: 2 residues within 4Å: Chain B: S.18, D.19 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.19 Water bridges: B:E.20 SO4.16: 4 residues within 4Å: Chain B: R.65, P.86, A.117, Q.118 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.118 Salt bridges: B:R.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rangel Pereira, M. et al., Lipases isolated from metagenomic libraries. To Be Published

Release Date

2024-08-07

Peptides

ORF30: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

ORF30