SMTL ID : 8q0t.1

Identification and optimisation of novel inhibitors of the Polyketide synthetase 13 thioesterase domain with antitubercular activity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x IJJ: 3-(3,4-dimethoxyphenyl)-~{N}-[2-(3,4-dimethoxyphenyl)ethyl]-1,2,4-oxadiazole-5-carboxamide(Non-covalent)

IJJ.1: 19 residues within 4Å: Chain A: S.86, L.87, V.90, A.114, V.115, R.116, N.193, I.196, I.201, Y.216, H.217, D.219, A.220, F.223, Y.227, G.235, W.236, Y.239, H.252 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.90, A:R.116, A:R.116, A:I.196, A:Y.216, A:A.220, A:F.223, A:Y.227, A:W.236 Hydrogen bonds: A:N.193, A:Y.216, A:Y.227, A:Y.227 IJJ.2: 20 residues within 4Å: Chain B: W.85, S.86, L.87, V.90, A.114, V.115, R.116, N.193, I.196, I.201, Y.216, H.217, D.219, A.220, F.223, Y.227, G.235, W.236, Y.239, H.252 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:V.90, B:R.116, B:I.196, B:Y.216, B:A.220, B:F.223, B:Y.227, B:W.236 Hydrogen bonds: B:N.193, B:Y.216, B:Y.227, B:Y.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Green, S.R. et al., Identification and Optimization of Novel Inhibitors of the Polyketide Synthase 13 Thioesterase Domain with Antitubercular Activity. J.Med.Chem. (2023)

Release Date

2023-11-22

Peptides

Polyketide synthase Pks13: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Polyketide synthase Pks13

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