SMTL ID : 8q26.2 (1 other biounit)

HsNMT1 in complex with both MyrCoA and GNCFSKPR inhibitor peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GLY- ASN- CYS- PHE- SER- LYS- PRO- ARG: MYR-GLY-ASN-CYS-PHE-SER-LYS-PRO-ARG(Non-covalent)

GLY-ASN-CYS-PHE-SER-LYS-PRO-ARG.1: 27 residues within 4Å: Chain A: Y.85, V.86, E.87, D.88, D.90, F.93, F.95, Y.97, N.151, T.187, A.188, G.189, Y.201, H.203, F.216, H.218, Y.306, S.310, I.374, G.375, D.376, G.377, N.378, L.379, Q.401 Ligands: COA.2, MYR.5 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:D.88, A:F.93, A:F.95, A:F.95, A:F.95, A:H.203, A:F.216, A:F.216 Hydrogen bonds: A:Y.85, A:D.88, A:D.90, A:D.90, A:D.90, A:T.187, A:T.187, A:Y.201, A:Y.306, A:I.374, A:D.376, A:D.376, A:D.376, A:G.377, A:G.377, A:Q.401 Water bridges: A:E.87, A:Y.97, A:T.187, A:H.203, A:Y.325, A:Y.325, A:I.374 Salt bridges: A:H.218

1 x COA: COENZYME A(Non-covalent)

COA.2: 23 residues within 4Å: Chain A: R.20, Y.22, Q.23, F.24, W.25, N.84, Y.85, V.86, L.153, C.154, V.155, R.160, S.161, K.162, R.163, V.164, A.165, P.166, T.187, A.188, L.192 Ligands: GLY-ASN-CYS-PHE-SER-LYS-PRO-ARG.1, MYR.5 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.85, A:V.86, A:L.153, A:V.155, A:A.165 Hydrogen bonds: A:R.20, A:Q.23, A:F.24, A:W.25, A:L.153, A:V.155, A:R.160, A:S.161, A:R.163, A:V.164, A:A.165 Water bridges: A:K.162, A:K.162, A:R.163, A:R.163 Salt bridges: A:R.20

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: L.66, D.67, L.68, R.107, W.111, H.116 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: E.44, K.47, H.177, Y.384 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.44, A:Y.384

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.5: 19 residues within 4Å: Chain A: W.25, Y.85, I.150, N.151, F.152, L.153, I.169, T.173, V.176, H.177, I.181, F.182, Q.183, A.184, Y.186, T.187, Y.384 Ligands: GLY-ASN-CYS-PHE-SER-LYS-PRO-ARG.1, COA.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.150, A:I.150, A:L.153, A:I.169, A:V.176, A:A.184, A:Y.186, A:Y.186, A:Y.186, A:Y.384 Hydrogen bonds: A:Y.85, A:F.152, A:L.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dian, C. et al., HsNMT1 in complex with both MyrCoA and GNCFSKPR inhibitor peptide. to be published

Release Date

2024-08-14

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glycylpeptide N-tetradecanoyltransferase 1

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