SMTL ID : 8q3t.1 (1 other biounit)

HsNMT1 in complex with both MyrCoA and GNCFSKPRVPTK inhibitor peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

hetero-1-1-mer

Ligands

1 x COA: COENZYME A(Non-covalent)

COA.1: 24 residues within 4Å: Chain A: R.20, Y.22, Q.23, F.24, W.25, N.84, Y.85, V.86, L.153, C.154, V.155, R.160, S.161, K.162, R.163, V.164, A.165, P.166, I.169, T.187, A.188, L.192 Chain B: G.1 Ligands: MYR.6 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Y.85, A:V.86, A:L.153, A:V.155 Hydrogen bonds: A:Q.23, A:F.24, A:W.25, A:L.153, A:V.155, A:R.160, A:S.161, A:R.163, A:V.164, A:A.165 Water bridges: A:R.20, A:R.20, A:R.20, A:S.161, A:K.162, A:K.162 Salt bridges: A:R.20, A:R.163

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: P.31, K.194, P.195, V.196, Y.382, L.383, W.386, K.387, C.388, P.389, S.390 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.195, A:L.383, A:L.383, A:C.388, A:C.388 Water bridges: A:K.194 GOL.3: 5 residues within 4Å: Chain A: P.109, G.110, P.135, K.146, E.275 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.146, A:K.146, A:E.275 Water bridges: A:N.137

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: V.37, K.194, P.389, S.390 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain A: L.66, D.67, L.68, R.107, W.111, H.116 Ligand excluded by PLIP

1 x MYR: MYRISTIC ACID(Covalent)

MYR.6: 19 residues within 4Å: Chain A: W.25, Y.85, I.150, N.151, F.152, L.153, I.169, T.173, V.176, H.177, I.181, F.182, Q.183, A.184, Y.186, T.187, Y.384 Chain B: G.1 Ligands: COA.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.150, A:I.150, A:L.153, A:I.169, A:V.176, A:A.184, A:Y.186, A:Y.186, A:Y.186, A:Y.186, A:Y.384 Hydrogen bonds: A:Y.85, A:F.152, A:L.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dian, C. et al., HsNMT1 in complex with both MyrCoA and GNCFSKPR inhibitor peptide. to be published

Release Date

2024-08-14

Peptides

Glycylpeptide N-tetradecanoyltransferase 1: A
MYR-GLY-ASN-CYS-PHE-SER-LYS-PRO-ARG-VAL-PRO: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Glycylpeptide N-tetradecanoyltransferase 1

MYR-GLY-ASN-CYS-PHE-SER-LYS-PRO-ARG-VAL-PRO

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