SMTL ID : 8q69.2 (1 other biounit)

Crystal structure of HsRNMT complexed with inhibitor DDD1060606

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: K.16, G.41, C.42, G.43, D.47, D.63, I.64, A.65, A.96, D.97, S.98, S.99, Q.120, F.121, V.122, Y.125, M.136 Ligands: K7R.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:I.64, A:A.65, A:D.97, A:D.97, A:S.98, A:S.99, A:Q.120 Water bridges: A:S.99, A:Q.120, A:Q.132 Salt bridges: A:K.16

1 x K7R: 1-[(3~{S})-3-(2~{H}-pyrazolo[3,4-b]pyridin-3-yl)piperidin-1-yl]-2-thiophen-3-yl-ethanone(Non-covalent)

K7R.2: 8 residues within 4Å: Chain A: R.9, N.12, F.121, Y.125, F.196, V.202, Y.267 Ligands: SAH.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.9, A:F.196, A:V.202 Hydrogen bonds: A:N.12, A:Y.125 Water bridges: A:Y.125, A:E.206, A:Y.267

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.9, G.46, R.75 6 PLIP interactions: 6 interactions with chain A Water bridges: A:N.13, A:N.13, A:G.46, A:G.46 Salt bridges: A:R.9, A:R.75

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: Y.130, F.190 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petit, A.P. et al., Structure-Guided Design of HsRNMT inhibitors. To Be Published

Release Date

2024-08-21

Peptides

mRNA cap guanine-N7 methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

mRNA cap guanine-N7 methyltransferase

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