SMTL ID : 8qcq.1

B. subtilis ApdA-stalled ribosomal complex

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 2.30 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x C- C- U- C- C- U: mRNA(Non-covalent)
1 x ARG- LEU- ALA- LEU- GLY- ASP- ARG- ALA- PRO: ApdA nascent chain(Non-functional Binders)
5 x ZN: ZINC ION(Non-covalent)
199 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
43 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
1 x PRO: PROLINE(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Morici, M. et al., RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity. Nat Commun (2024)
Release Date
2024-03-20
Peptides
50S ribosomal protein L32: A
50S ribosomal protein L33 1: B
50S ribosomal protein L34: C
50S ribosomal protein L35: D
50S ribosomal protein L36: E
Large ribosomal subunit protein bL31-A: F
50S ribosomal protein L2: I
50S ribosomal protein L3: J
50S ribosomal protein L4: K
50S ribosomal protein L5: L
Large ribosomal subunit protein uL6: M
50S ribosomal protein L13: N
50S ribosomal protein L14: O
50S ribosomal protein L15: P
50S ribosomal protein L16: Q
50S ribosomal protein L17: R
50S ribosomal protein L18: S
50S ribosomal protein L19: T
Large ribosomal subunit protein bL20: U
50S ribosomal protein L21: V
50S ribosomal protein L22: W
Large ribosomal subunit protein uL23: X
50S ribosomal protein L24: Y
Large ribosomal subunit protein bL27: Z
50S ribosomal protein L28: 0
50S ribosomal protein L29: 1
Large ribosomal subunit protein uL30: 2
30S ribosomal protein S5: 4
30S ribosomal protein S11: 5
30S ribosomal protein S12: 6
30S ribosomal protein S15: 7
30S ribosomal protein S17: 8
30S ribosomal protein S20: 9
Small ribosomal subunit protein uS3: c
Small ribosomal subunit protein uS7: d
30S ribosomal protein S9: e
30S ribosomal protein S10: f
30S ribosomal protein S13: g
30S ribosomal protein S14: h
30S ribosomal protein S19: i
30S ribosomal protein S8: j
30S ribosomal protein S18: k
30S ribosomal protein S6: l
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
0
B
1
C
2
D
3
E
4
F
6
I
C
J
D
K
E
L
F
M
G
N
J
O
K
P
L
Q
M
R
N
S
O
T
P
U
Q
V
R
W
S
X
T
Y
U
Z
W
0
X
1
Y
2
Z
4
e
5
k
6
l
7
o
8
q
9
t
c
c
d
g
e
i
f
j
g
m
h
n
i
s
j
h
k
r
l
f

50S ribosomal protein L32

50S ribosomal protein L33 1

50S ribosomal protein L34

50S ribosomal protein L35

50S ribosomal protein L36

Large ribosomal subunit protein bL31-A

50S ribosomal protein L2

50S ribosomal protein L3

50S ribosomal protein L4

50S ribosomal protein L5

Large ribosomal subunit protein uL6

50S ribosomal protein L13

50S ribosomal protein L14

50S ribosomal protein L15

50S ribosomal protein L16

50S ribosomal protein L17

50S ribosomal protein L18

50S ribosomal protein L19

Large ribosomal subunit protein bL20

50S ribosomal protein L21

50S ribosomal protein L22

Large ribosomal subunit protein uL23

50S ribosomal protein L24

Large ribosomal subunit protein bL27

50S ribosomal protein L28

50S ribosomal protein L29

Large ribosomal subunit protein uL30

30S ribosomal protein S5

30S ribosomal protein S11

30S ribosomal protein S12

30S ribosomal protein S15

30S ribosomal protein S17

30S ribosomal protein S20

Small ribosomal subunit protein uS3

Small ribosomal subunit protein uS7

30S ribosomal protein S9

30S ribosomal protein S10

30S ribosomal protein S13

30S ribosomal protein S14

30S ribosomal protein S19

30S ribosomal protein S8

30S ribosomal protein S18

30S ribosomal protein S6

Related Entries With Identical Sequence

3j3v.1 | 3j3w.1 | 3j9w.1 | 5njt.1 | 6ha1.1 | 6ha8.1 | 6htq.1 | 6ppf.1 | 6ppk.1 | 6pvk.1 | 6tnn.1 | 6tpq.1 | 7aqc.1 | 7aqd.1 | 7as8.1 | 7as9.1 | 7o5b.1 | 7ope.1 | 7qgu.1 | 7qh4.1 | 7qv1.1 | 7qv2.1 | 7qv3.1 | 7s9u.1 | 7sae.1 | 8buu.1 | 8cdu.1 | 8cdv.1 | 8cec.1 | 8ced.1  more...