SMTL ID : 8qdg.1

compound 1a bound KMT9 crystal structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SDU: (2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{S})-pyrrolidin-3-yl]amino]-2-azanyl-butanoic acid

SDU.1: 32 residues within 4Å: Chain A: Y.12, P.14, D.17, T.18, L.21, E.40, V.41, G.42, S.43, G.44, S.45, G.46, V.48, T.65, D.66, I.67, N.68, A.71, T.91, D.92, L.93, F.110, N.111, P.112, P.113, Y.114, V.115, A.129, A.130, W.131, V.140, R.143 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.12, A:W.131 Hydrogen bonds: A:T.18, A:S.43, A:G.44, A:D.66, A:I.67, A:D.92, A:D.92, A:L.93, A:N.111, A:P.112, A:R.143 Water bridges: A:Y.12, A:G.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheng, W. et al., compound 1a bound KMT9 crystal structure. To Be Published

Release Date

2024-09-11

Peptides

Methyltransferase N6AMT1: A
Multifunctional methyltransferase subunit TRM112-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Methyltransferase N6AMT1

Multifunctional methyltransferase subunit TRM112-like protein

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