SMTL ID : 8qjf.1

Connexin-32 gap junction channel in complex with 2-aminoethoxydiphenyl borate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

12 x CLR: CHOLESTEROL

CLR.1: 7 residues within 4Å: Chain A: L.9, L.10, F.29, S.85 Chain F: M.1, W.3, L.6 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain A Hydrophobic interactions: F:W.3, F:L.6, A:L.9, A:F.29 CLR.2: 7 residues within 4Å: Chain A: M.1, W.3, L.6 Chain B: L.9, L.10, G.21, S.85 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.3, A:L.6, B:L.9 CLR.3: 8 residues within 4Å: Chain B: M.1, W.3, L.6 Chain C: L.9, L.10, G.21, F.29, S.85 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:W.3, B:L.6, C:L.9, C:F.29 CLR.4: 8 residues within 4Å: Chain C: M.1, W.3, L.6 Chain D: L.9, L.10, G.21, F.29, S.85 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:W.3, C:L.6, D:L.9, D:F.29 CLR.5: 8 residues within 4Å: Chain D: M.1, W.3, L.6 Chain E: L.9, L.10, G.21, F.29, S.85 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain E Hydrophobic interactions: D:W.3, D:L.6, E:L.9, E:F.29 CLR.6: 8 residues within 4Å: Chain E: M.1, W.3, L.6 Chain F: L.9, L.10, G.21, F.29, S.85 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain E Hydrophobic interactions: F:L.9, F:F.29, E:W.3, E:L.6 CLR.7: 8 residues within 4Å: Chain G: L.9, L.10, G.21, F.29, S.85 Chain L: M.1, W.3, L.6 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain G Hydrophobic interactions: L:W.3, L:L.6, G:L.9, G:F.29 CLR.8: 8 residues within 4Å: Chain G: M.1, W.3, L.6 Chain H: L.9, L.10, G.21, F.29, S.85 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain G Hydrophobic interactions: H:L.9, H:F.29, G:W.3, G:L.6 CLR.9: 8 residues within 4Å: Chain H: M.1, W.3, L.6 Chain I: L.9, L.10, G.21, F.29, S.85 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain H Hydrophobic interactions: I:L.9, I:F.29, H:W.3, H:L.6 CLR.10: 8 residues within 4Å: Chain I: M.1, W.3, L.6 Chain J: L.9, L.10, G.21, F.29, S.85 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain J Hydrophobic interactions: I:W.3, I:L.6, J:L.9, J:F.29 CLR.11: 8 residues within 4Å: Chain J: M.1, W.3, L.6 Chain K: L.9, L.10, G.21, F.29, S.85 4 PLIP interactions: 2 interactions with chain K, 2 interactions with chain J Hydrophobic interactions: K:L.9, K:F.29, J:W.3, J:L.6 CLR.12: 8 residues within 4Å: Chain K: M.1, W.3, L.6 Chain L: L.9, L.10, G.21, F.29, S.85 4 PLIP interactions: 2 interactions with chain K, 2 interactions with chain L Hydrophobic interactions: K:W.3, K:L.6, L:L.9, L:F.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lavriha, P. et al., Two distinct mechanisms of connexin channel inhibition by mefloquine and 2-aminoethoxydiphenyl borate. To Be Published

Release Date

2024-09-25

Peptides

Gap junction beta-1 protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
E

E
F

F
G

G
H

H
I

I
J

J
K

K
L

L
M

Membrane

We predict this structure to be a membrane protein.
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Gap junction beta-1 protein

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