SMTL ID : 8qk6.1

Connexin-32 hemichannel upon addition of 2-aminoetoxydiphenyl borate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x CLR: CHOLESTEROL

CLR.1: 10 residues within 4Å: Chain A: L.9, L.10, G.21, S.26, F.29, S.85 Chain C: M.1, W.3, L.6, I.30 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:W.3, C:W.3, C:L.6, C:I.30, A:L.9, A:F.29 CLR.2: 9 residues within 4Å: Chain A: M.1, W.3, L.6, I.30 Chain B: L.9, L.10, G.21, F.29, S.85 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.3, A:W.3, A:L.6, A:I.30, B:L.9, B:F.29 CLR.3: 9 residues within 4Å: Chain C: L.9, L.10, G.21, F.29, S.85 Chain D: M.1, W.3, L.6, I.30 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D Hydrophobic interactions: C:L.9, C:F.29, D:W.3, D:W.3, D:L.6, D:I.30 CLR.4: 9 residues within 4Å: Chain D: L.9, L.10, G.21, F.29, S.85 Chain E: M.1, W.3, L.6, I.30 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain E Hydrophobic interactions: D:L.9, D:F.29, E:W.3, E:W.3, E:L.6, E:I.30 CLR.5: 9 residues within 4Å: Chain E: L.9, L.10, G.21, F.29, S.85 Chain F: M.1, W.3, L.6, I.30 6 PLIP interactions: 2 interactions with chain E, 4 interactions with chain F Hydrophobic interactions: E:L.9, E:F.29, F:W.3, F:W.3, F:L.6, F:I.30 CLR.6: 9 residues within 4Å: Chain B: M.1, W.3, L.6, I.30 Chain F: L.9, L.10, G.21, F.29, S.85 6 PLIP interactions: 2 interactions with chain F, 4 interactions with chain B Hydrophobic interactions: F:L.9, F:F.29, B:W.3, B:W.3, B:L.6, B:I.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lavriha, P. et al., Two distinct mechanisms of connexin channel inhibition by mefloquine and 2-aminoethoxydiphenyl borate. To Be Published

Release Date

2024-09-25

Peptides

Gap junction beta-1 protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Membrane

We predict this structure to be a membrane protein.
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Gap junction beta-1 protein

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