SMTL ID : 8qnm.1 (1 other biounit)

OPR3 with redesigned Loop 6 (9aa) in complex with NADPH4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: A.39, P.40, M.41, T.42, G.73, Q.115, H.194, H.197, R.246, T.289, S.320, G.321, G.322, Y.342, G.343, R.344, F.370, Y.371 Ligands: 5J8.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:R.344, A:F.370, A:Y.371 Hydrogen bonds: A:P.40, A:T.42, A:G.73, A:Q.115, A:Q.115, A:R.246, A:R.246, A:T.289, A:S.320, A:G.321, A:G.322, A:G.343, A:R.344 Water bridges: A:Y.323, A:Y.323, A:R.344, A:L.345 Salt bridges: A:R.344

1 x 5J8: [[(2R,3S,4R,5R)-5-(5-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate(Non-covalent)

5J8.2: 11 residues within 4Å: Chain A: T.42, W.117, H.194, H.197, Y.199, H.253, R.344, Y.365, R.367, Y.371 Ligands: FMN.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.42, A:W.117, A:R.344, A:Y.365, A:Y.371 Water bridges: A:H.253, A:Y.365, A:R.367, A:R.367 Salt bridges: A:R.344, A:R.367, A:R.367, A:R.367

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerschbaumer, B. et al., Crystal structures of OPR3 wildtype and variants in complex with NAD(P)H. To Be Published

Release Date

2025-04-09

Peptides

12-oxophytodienoate reductase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

12-oxophytodienoate reductase 3

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