SMTL ID : 8qnp.2 (1 other biounit)

OPR3 with redesigned loop 6 (9aa) in complex with NADH4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: A.39, P.40, M.41, T.42, G.73, Q.115, H.194, H.197, R.246, T.289, S.320, G.321, G.322, Y.342, G.343, R.344, F.370, Y.371 Ligands: WI6.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:M.41, A:R.344, A:F.370, A:Y.371 Hydrogen bonds: A:P.40, A:T.42, A:T.42, A:G.73, A:Q.115, A:Q.115, A:H.197, A:R.246, A:R.246, A:S.320, A:S.320, A:G.321, A:G.322, A:Y.323, A:G.343, A:R.344 Water bridges: A:L.345 Salt bridges: A:R.344

1 x WI6: 1,4,5,6-Tetrahydronicotinamide adenine dinucleotide(Non-covalent)

WI6.2: 10 residues within 4Å: Chain A: T.42, W.117, W.146, H.194, H.197, Y.199, H.253, R.367, Y.371 Ligands: FMN.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.42, A:T.42, A:H.197, A:Y.199 Salt bridges: A:R.367 pi-Cation interactions: A:H.253

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.344, Y.365, R.367 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.344, A:R.367

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 3 residues within 4Å: Chain A: T.91, K.92, E.93 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.91 Hydrogen bonds: A:K.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerschbaumer, B. et al., Crystal structures of OPR3 wildtype and variants with NAD(P)H. To Be Published

Release Date

2025-04-09

Peptides

12-oxophytodienoate reductase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

12-oxophytodienoate reductase 3

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