SMTL ID : 8qrd.1 (5 other biounits)

OleP in complex with testosterone in high salt crystallization conditions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: V.96, L.97, H.104, R.108, F.115, I.160, M.240, A.247, G.248, T.251, L.293, F.299, R.301, F.324, A.351, F.352, G.353, H.357, C.359, I.360, G.361, L.369 Ligands: TES.2 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:F.115, A:I.160, A:L.293, A:F.352, A:I.360, A:L.369 Hydrogen bonds: A:F.299 Salt bridges: A:H.104, A:R.108, A:R.301, A:H.357 Metal complexes: A:C.359

1 x TES: TESTOSTERONE(Non-covalent)

TES.2: 10 residues within 4Å: Chain A: L.97, L.182, S.243, I.246, A.247, T.251, V.294, S.298 Ligands: HEM.1, FMT.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.97, A:L.182, A:I.246, A:A.247, A:T.251, A:V.294

6 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 4 residues within 4Å: Chain A: V.17, P.18, A.19, R.47 3 PLIP interactions: 3 interactions with chain A Water bridges: A:A.19, A:R.47, A:R.47 FMT.4: 2 residues within 4Å: Chain A: M.181 Ligands: TES.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.181 FMT.5: 4 residues within 4Å: Chain A: R.38, R.329, D.330, E.331 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.38, A:D.330, A:E.331, A:E.331 FMT.6: 1 residues within 4Å: Chain A: S.62 No protein-ligand interaction detected (PLIP) FMT.7: 2 residues within 4Å: Chain A: Q.99, E.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.99 Water bridges: A:Q.99 FMT.8: 4 residues within 4Å: Chain A: A.282, E.285, E.286, N.347 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.286, A:N.347

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 4 residues within 4Å: Chain A: R.85, F.87, F.299, V.300 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.300 Water bridges: A:S.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Costanzo, A. et al., Binding of steroid substrates reveals the key to the productive transition of the cytochrome P450 OleP. Structure (2024)

Release Date

2024-07-03

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P-450

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