SMTL ID : 8qrd.2 (5 other biounits)

OleP in complex with testosterone in high salt crystallization conditions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 22 residues within 4Å: Chain A: V.96, L.97, H.104, R.108, F.115, I.160, L.244, A.247, G.248, T.251, L.293, R.301, F.324, A.351, F.352, G.353, H.357, C.359, I.360, G.361, L.369 Ligands: TES.2 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:F.115, A:I.160, A:L.244, A:L.293, A:F.352, A:I.360, A:L.369 Hydrogen bonds: A:F.299 Salt bridges: A:H.104, A:R.108, A:R.301, A:H.357 Metal complexes: A:C.359

1 x TES: TESTOSTERONE(Non-covalent)

TES.2: 8 residues within 4Å: Chain A: L.97, L.182, S.243, I.246, A.247, V.294, S.298 Ligands: HEM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.97, A:L.182, A:I.246, A:A.247, A:V.294 Water bridges: A:F.299, A:F.299

13 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 3 residues within 4Å: Chain A: F.352, H.358, R.366 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.358, A:R.366, A:R.366 FMT.4: 6 residues within 4Å: Chain A: A.19, Y.20, P.21, R.47, L.48, P.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.20, A:L.48 FMT.5: 3 residues within 4Å: Chain A: R.118, E.121, R.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.118, A:E.121 FMT.6: 3 residues within 4Å: Chain A: R.346, N.347, P.348 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.347 FMT.7: 2 residues within 4Å: Chain A: M.123, R.126 No protein-ligand interaction detected (PLIP) FMT.8: 4 residues within 4Å: Chain A: V.153, P.154, R.171, R.175 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.171 FMT.9: 7 residues within 4Å: Chain A: V.148, V.153, R.175, V.253, N.254, K.395, L.403 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.175, A:K.395 FMT.10: 4 residues within 4Å: Chain A: E.191, R.194, V.195 Ligands: FMT.11 No protein-ligand interaction detected (PLIP) FMT.11: 4 residues within 4Å: Chain A: A.190, E.191, R.194 Ligands: FMT.10 No protein-ligand interaction detected (PLIP) FMT.12: 4 residues within 4Å: Chain A: R.269, L.340, D.341, F.342 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.341, A:F.342 FMT.13: 3 residues within 4Å: Chain A: R.38, R.329, E.331 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.38, A:D.330, A:D.330, A:E.331 FMT.14: 4 residues within 4Å: Chain A: M.61, R.65, V.333, P.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.65 Water bridges: A:S.62 FMT.15: 3 residues within 4Å: Chain A: R.379, F.380, W.410 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.16: 4 residues within 4Å: Chain A: R.85, F.87, F.299, V.300 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.300 Water bridges: A:P.84, A:S.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Costanzo, A. et al., Binding of steroid substrates reveals the key to the productive transition of the cytochrome P450 OleP. Structure (2024)

Release Date

2024-07-03

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytochrome P-450

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